RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 SYNGR3O43761 229 aa8.65□□□□□ -1.02
SS18-205ENST00000542420 GDF9O60383 454 aa8.65□□□□□ -1.02
SS18-205ENST00000542420 HPNP05981 417 aa8.65□□□□□ -1.02
SS18-205ENST00000542420 ABOP16442 354 aa8.65□□□□□ -1.02
SS18-205ENST00000542420 S100A11P31949 105 aa8.65□□□□□ -1.02
SS18-205ENST00000542420 OTX2P32243 289 aa8.65□□□□□ -1.02
SS18-205ENST00000542420 GFRA1P56159 465 aa8.65□□□□□ -1.02
SS18-205ENST00000542420 TAS2R46P59540 309 aa8.65□□□□□ -1.02
SS18-205ENST00000542420 FLI1Q01543 452 aaPredicted RBP8.65□□□□□ -1.02
SS18-205ENST00000542420 Q0VFX4 171 aa8.65□□□□□ -1.02
SS18-205ENST00000542420 CNN3Q15417 329 aaKnown RBP8.65□□□□□ -1.02
SS18-205ENST00000542420 LIN54Q6MZP7 749 aa8.65□□□□□ -1.02
SS18-205ENST00000542420 HOGA1Q86XE5 327 aa8.65□□□□□ -1.02
SS18-205ENST00000542420 SULF2Q8IWU5 870 aa8.65□□□□□ -1.02
SS18-205ENST00000542420 CHST4Q8NCG5 386 aa8.65□□□□□ -1.02
SS18-205ENST00000542420 TMEM185AQ8NFB2 350 aa8.65□□□□□ -1.02
SS18-205ENST00000542420 OR8S1Q8NH09 359 aa8.65□□□□□ -1.02
SS18-205ENST00000542420 OR14L1PQ8NHC6 308 aa8.65□□□□□ -1.02
SS18-205ENST00000542420 MITD1Q8WV92 249 aa8.65□□□□□ -1.02
SS18-205ENST00000542420 GSX2Q9BZM3 304 aa8.65□□□□□ -1.02
SS18-205ENST00000542420 PCDHB16Q9NRJ7 776 aa8.65□□□□□ -1.02
SS18-205ENST00000542420 TINAGQ9UJW2 476 aa8.65□□□□□ -1.02
SS18-205ENST00000542420 DOCK10Q96BY6 2186 aa8.65□□□□□ -1.02
SS18-205ENST00000542420 A0A0D9SG52 128 aa8.65□□□□□ -1.03
SS18-205ENST00000542420 LINC00587B1AMM8 73 aa8.65□□□□□ -1.03
SS18-205ENST00000542420 F8W036 122 aa8.65□□□□□ -1.03
SS18-205ENST00000542420 GOSR2O14653 212 aa8.65□□□□□ -1.03
SS18-205ENST00000542420 SGCEO43556 437 aa8.65□□□□□ -1.03
SS18-205ENST00000542420 SSX5O60225 188 aa8.65□□□□□ -1.03
SS18-205ENST00000542420 JMJD7P0C870 316 aa8.65□□□□□ -1.03
SS18-205ENST00000542420 CPT2P23786 658 aa8.65□□□□□ -1.03
SS18-205ENST00000542420 PMELP40967 661 aa8.65□□□□□ -1.03
SS18-205ENST00000542420 PTGFRP43088 359 aa8.65□□□□□ -1.03
SS18-205ENST00000542420 ZNF169Q14929 603 aaPredicted RBP8.65□□□□□ -1.03
SS18-205ENST00000542420 KISS1Q15726 138 aa8.65□□□□□ -1.03
SS18-205ENST00000542420 ASCL4Q6XD76 172 aa8.65□□□□□ -1.03
SS18-205ENST00000542420 C3P1Q6ZMU1 363 aa8.65□□□□□ -1.03
SS18-205ENST00000542420 TIPARPQ7Z3E1 657 aaKnown RBP8.65□□□□□ -1.03
SS18-205ENST00000542420 TMEM17Q86X19 198 aa8.65□□□□□ -1.03
SS18-205ENST00000542420 OR6K3Q8NGY3 331 aa8.65□□□□□ -1.03
SS18-205ENST00000542420 DVL3Q92997 716 aaPredicted RBP8.65□□□□□ -1.03
SS18-205ENST00000542420 ELMOD3Q96FG2 381 aa8.65□□□□□ -1.03
SS18-205ENST00000542420 FAM71F1Q96KD3 344 aaPredicted RBP8.65□□□□□ -1.03
SS18-205ENST00000542420 LYZL4Q96KX0 146 aa8.65□□□□□ -1.03
SS18-205ENST00000542420 UCN2Q96RP3 112 aa8.65□□□□□ -1.03
SS18-205ENST00000542420 SLC6A15Q9H2J7 730 aa8.65□□□□□ -1.03
SS18-205ENST00000542420 SDK2Q58EX2 2172 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 IGKV1-9A0A0C4DH69 117 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 hCG_1807616A0A1W2PRN6 198 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 RPL36A-HNRNPH2H7BZ11 118 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 NUPL2O15504 423 aaKnown RBP8.64□□□□□ -1.03
SS18-205ENST00000542420 RP2O75695 350 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 OPN1LWP04000 364 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 IFNA6P05013 189 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 COX5BP10606 129 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 KLK2P20151 261 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 CD34P28906 385 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 H2BFSP57053 126 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 CXADRP78310 365 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 FOXO1Q12778 655 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 DHRS2Q13268 280 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 RSPO1Q2MKA7 263 aaPredicted RBP8.64□□□□□ -1.03
SS18-205ENST00000542420 ZNF468Q5VIY5 522 aaPredicted RBP8.64□□□□□ -1.03
SS18-205ENST00000542420 TMEM42Q69YG0 159 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 OR10K2Q6IF99 312 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 AAED1Q7RTV5 226 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 OR52B4Q8NGK2 314 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 OR1F12Q8NHA8 337 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 PSMF1Q92530 271 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 MRPS24Q96EL2 167 aaKnown RBP8.64□□□□□ -1.03
SS18-205ENST00000542420 JSRP1Q96MG2 331 aaPredicted RBP8.64□□□□□ -1.03
SS18-205ENST00000542420 GPER1Q99527 375 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 PHB2Q99623 299 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 DPCDQ9BVM2 203 aaPredicted RBP8.64□□□□□ -1.03
SS18-205ENST00000542420 RBM24Q9BX46 236 aaKnown RBP8.64□□□□□ -1.03
SS18-205ENST00000542420 SELENOIQ9C0D9 397 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 SAV1Q9H4B6 383 aaPredicted RBP8.64□□□□□ -1.03
SS18-205ENST00000542420 PLEK2Q9NYT0 353 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 IL36GQ9NZH8 169 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 HSF4Q9ULV5 492 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 EDARQ9UNE0 448 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 TIMM10BQ9Y5J6 103 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 UNC80Q8N2C7 3258 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 PCSK5Q92824 1860 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 A0A0A6YYD4 124 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 MEIS3P1A6NDR6 274 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 M0QYG6 137 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 ABCD4O14678 606 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 RRP8O43159 456 aaKnown RBP8.64□□□□□ -1.03
SS18-205ENST00000542420 DUS4LO95620 317 aaKnown RBP8.64□□□□□ -1.03
SS18-205ENST00000542420 MPIG6BO95866 241 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 ZNF35P13682 527 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 CXCL2P19875 107 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 POU3F2P20265 443 aaPredicted RBP8.64□□□□□ -1.03
SS18-205ENST00000542420 FPR2P25090 351 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 OR3A4PP47883 348 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 CYCSP99999 105 aaKnown RBP8.64□□□□□ -1.03
SS18-205ENST00000542420 HYAL4Q2M3T9 481 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 NHLRC3Q5JS37 347 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 LHFPL2Q6ZUX7 228 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms