RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 FAM25AB3EWG3 89 aa15.24■□□□□ 0.03
CLIP1-215ENST00000541108 FAM25CB3EWG5 89 aa15.24■□□□□ 0.03
CLIP1-215ENST00000541108 FAM25GB3EWG6 89 aa15.24■□□□□ 0.03
CLIP1-215ENST00000541108 PTAFRP25105 342 aa15.24■□□□□ 0.03
CLIP1-215ENST00000541108 CALCRP30988 508 aa15.24■□□□□ 0.03
CLIP1-215ENST00000541108 POU3F4P49335 361 aa15.24■□□□□ 0.03
CLIP1-215ENST00000541108 FUT6P51993 359 aa15.24■□□□□ 0.03
CLIP1-215ENST00000541108 TMEM108Q6UXF1 575 aa15.24■□□□□ 0.03
CLIP1-215ENST00000541108 PNLDC1Q8NA58 520 aaKnown RBP15.24■□□□□ 0.03
CLIP1-215ENST00000541108 OR4D6Q8NGJ1 314 aa15.24■□□□□ 0.03
CLIP1-215ENST00000541108 KLF14Q8TD94 323 aaPredicted RBP15.24■□□□□ 0.03
CLIP1-215ENST00000541108 PTX4Q96A99 478 aa15.24■□□□□ 0.03
CLIP1-215ENST00000541108 NGBQ9NPG2 151 aa15.24■□□□□ 0.03
CLIP1-215ENST00000541108 GPR173Q9NS66 373 aa15.24■□□□□ 0.03
CLIP1-215ENST00000541108 MPC1Q9Y5U8 109 aa15.24■□□□□ 0.03
CLIP1-215ENST00000541108 ANKRD30BLA7E2S9 258 aa15.23■□□□□ 0.03
CLIP1-215ENST00000541108 EIF4EP06730 217 aaKnown RBP15.23■□□□□ 0.03
CLIP1-215ENST00000541108 ALDH3B1P43353 468 aa15.23■□□□□ 0.03
CLIP1-215ENST00000541108 RBP2P50120 134 aa15.23■□□□□ 0.03
CLIP1-215ENST00000541108 ART1P52961 327 aa15.23■□□□□ 0.03
CLIP1-215ENST00000541108 XKRXQ6PP77 449 aa15.23■□□□□ 0.03
CLIP1-215ENST00000541108 FAM131AQ6UXB0 335 aa15.23■□□□□ 0.03
CLIP1-215ENST00000541108 LHFPL2Q6ZUX7 228 aa15.23■□□□□ 0.03
CLIP1-215ENST00000541108 ANGPTL5Q86XS5 388 aa15.23■□□□□ 0.03
CLIP1-215ENST00000541108 GPER1Q99527 375 aa15.23■□□□□ 0.03
CLIP1-215ENST00000541108 PAPOLGQ9BWT3 736 aaKnown RBP15.23■□□□□ 0.03
CLIP1-215ENST00000541108 KCNJ16Q9NPI9 418 aa15.23■□□□□ 0.03
CLIP1-215ENST00000541108 MRPL15Q9P015 296 aaKnown RBP15.23■□□□□ 0.03
CLIP1-215ENST00000541108 RABL2AQ9UBK7 228 aaPredicted RBP15.23■□□□□ 0.03
CLIP1-215ENST00000541108 GHRLQ9UBU3 117 aa15.23■□□□□ 0.03
CLIP1-215ENST00000541108 RABL2BQ9UNT1 228 aa15.23■□□□□ 0.03
CLIP1-215ENST00000541108 IGSF10Q6WRI0 2623 aa15.23■□□□□ 0.03
CLIP1-215ENST00000541108 BPNT1O95861 308 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 UBBP0CG47 229 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 AGAP20933 346 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 CD40P25942 277 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 MTCP1P56278 107 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 SORDQ00796 357 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 P2RY14Q15391 338 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 ZNF718Q3SXZ3 478 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 SPATA46Q5T0L3 261 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 MBNL2Q5VZF2 373 aaKnown RBP15.22■□□□□ 0.03
CLIP1-215ENST00000541108 CRIP3Q6Q6R5 217 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 BORCS8Q96FH0 119 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 S100A16Q96FQ6 103 aaKnown RBP15.22■□□□□ 0.03
CLIP1-215ENST00000541108 EXTL2Q9UBQ6 330 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 FBLN5Q9UBX5 448 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 ZNF850A8MQ14 1090 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 IQCF6A8MYZ5 107 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 B8ZZF3 427 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 J3QRK9 145 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 LDLRAD4O15165 306 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 TPPPO94811 219 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 THBDP07204 575 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 GNLYP22749 145 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 GLRXP35754 106 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 PTGFRP43088 359 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 ERVS71-1P61550 626 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 PSG7Q13046 419 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 PRDX4Q13162 271 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 CEACAM21Q3KPI0 293 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 PLCXD3Q63HM9 321 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 OR2T2Q6IF00 324 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 ALKBH2Q6NS38 261 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 MOB3CQ70IA8 216 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 ZDHHC23Q8IYP9 409 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 SYNPRQ8TBG9 265 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 SLC25A38Q96DW6 304 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 WFIKKN1Q96NZ8 548 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 SPACA5Q96QH8 159 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 PPP1R3EQ9H7J1 279 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 RHBDL2Q9NX52 303 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 NDRG3Q9UGV2 375 aa15.22■□□□□ 0.03
CLIP1-215ENST00000541108 FAM90A27PA6NNH2 459 aa15.21■□□□□ 0.03
CLIP1-215ENST00000541108 NAT2P11245 290 aa15.21■□□□□ 0.03
CLIP1-215ENST00000541108 KITLGP21583 273 aa15.21■□□□□ 0.03
CLIP1-215ENST00000541108 GCH1P30793 250 aa15.21■□□□□ 0.03
CLIP1-215ENST00000541108 NR4A2P43354 598 aa15.21■□□□□ 0.03
CLIP1-215ENST00000541108 ATP1B3P54709 279 aa15.21■□□□□ 0.03
CLIP1-215ENST00000541108 NKX6-1P78426 367 aaPredicted RBP15.21■□□□□ 0.03
CLIP1-215ENST00000541108 ZNF79Q15937 498 aa15.21■□□□□ 0.03
CLIP1-215ENST00000541108 IGFBP7Q16270 282 aa15.21■□□□□ 0.03
CLIP1-215ENST00000541108 AWAT2Q6E213 333 aa15.21■□□□□ 0.03
CLIP1-215ENST00000541108 BAIAP2L2Q6UXY1 529 aa15.21■□□□□ 0.03
CLIP1-215ENST00000541108 CMTM4Q8IZR5 234 aa15.21■□□□□ 0.03
CLIP1-215ENST00000541108 GDPD1Q8N9F7 314 aa15.21■□□□□ 0.03
CLIP1-215ENST00000541108 OR5A2Q8NGI9 324 aa15.21■□□□□ 0.03
CLIP1-215ENST00000541108 NPRL2Q8WTW4 380 aa15.21■□□□□ 0.03
CLIP1-215ENST00000541108 NKX3-1Q99801 234 aaPredicted RBP15.21■□□□□ 0.03
CLIP1-215ENST00000541108 CCDC32Q9BV29 185 aa15.21■□□□□ 0.03
CLIP1-215ENST00000541108 MRPS28Q9Y2Q9 187 aaKnown RBP15.21■□□□□ 0.03
CLIP1-215ENST00000541108 TMEM272A0A1B0GTI8 110 aa15.2■□□□□ 0.02
CLIP1-215ENST00000541108 RAB6AP20340 208 aa15.2■□□□□ 0.02
CLIP1-215ENST00000541108 PITPNBP48739 271 aa15.2■□□□□ 0.02
CLIP1-215ENST00000541108 IL18Q14116 193 aa15.2■□□□□ 0.02
CLIP1-215ENST00000541108 DMRTC1Q5HYR2 192 aa15.2■□□□□ 0.02
CLIP1-215ENST00000541108 RGS7BPQ6MZT1 257 aaPredicted RBP15.2■□□□□ 0.02
CLIP1-215ENST00000541108 C16orf87Q6PH81 154 aa15.2■□□□□ 0.02
CLIP1-215ENST00000541108 WFDC8Q8IUA0 241 aa15.2■□□□□ 0.02
CLIP1-215ENST00000541108 ZNF808Q8N4W9 903 aaPredicted RBP15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms