RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 ZNF629Q9UEG4 869 aaPredicted RBP14.81□□□□□ -0.04
USP28-208ENST00000540438 TMEM14DPA8MWL7 114 aa14.81□□□□□ -0.04
USP28-208ENST00000540438 DLSTP36957 453 aa14.81□□□□□ -0.04
USP28-208ENST00000540438 OR3A2P47893 321 aa14.81□□□□□ -0.04
USP28-208ENST00000540438 MTCP1P56278 107 aa14.81□□□□□ -0.04
USP28-208ENST00000540438 GMFBP60983 142 aa14.81□□□□□ -0.04
USP28-208ENST00000540438 C1orf210Q8IVY1 113 aa14.81□□□□□ -0.04
USP28-208ENST00000540438 ANGPTL6Q8NI99 470 aa14.81□□□□□ -0.04
USP28-208ENST00000540438 UTP23Q9BRU9 249 aaKnown RBP14.81□□□□□ -0.04
USP28-208ENST00000540438 COMMD9Q9P000 198 aa14.81□□□□□ -0.04
USP28-208ENST00000540438 HDGFL3Q9Y3E1 203 aa14.81□□□□□ -0.04
USP28-208ENST00000540438 P04436 131 aa14.8□□□□□ -0.04
USP28-208ENST00000540438 PTGFRP43088 359 aa14.8□□□□□ -0.04
USP28-208ENST00000540438 NOVA1P51513 510 aaKnown RBP14.8□□□□□ -0.04
USP28-208ENST00000540438 SP6Q3SY56 376 aa14.8□□□□□ -0.04
USP28-208ENST00000540438 TSPO2Q5TGU0 170 aa14.8□□□□□ -0.04
USP28-208ENST00000540438 TMEM17Q86X19 198 aa14.8□□□□□ -0.04
USP28-208ENST00000540438 TOMM40LQ969M1 308 aa14.8□□□□□ -0.04
USP28-208ENST00000540438 A0A0B4J2A0 478 aa14.8□□□□□ -0.04
USP28-208ENST00000540438 EFSO43281 561 aa14.8□□□□□ -0.04
USP28-208ENST00000540438 HIST1H1DP16402 221 aaKnown RBP14.8□□□□□ -0.04
USP28-208ENST00000540438 ZNF32P17041 273 aa14.8□□□□□ -0.04
USP28-208ENST00000540438 IL11RAQ14626 422 aa14.8□□□□□ -0.04
USP28-208ENST00000540438 NABP1Q96AH0 204 aa14.8□□□□□ -0.04
USP28-208ENST00000540438 SGK3Q96BR1 496 aa14.8□□□□□ -0.04
USP28-208ENST00000540438 TRAF4Q9BUZ4 470 aaPredicted RBP14.8□□□□□ -0.04
USP28-208ENST00000540438 PARP12Q9H0J9 701 aaKnown RBP14.8□□□□□ -0.04
USP28-208ENST00000540438 NELFAQ9H3P2 528 aa14.8□□□□□ -0.04
USP28-208ENST00000540438 SHPKQ9UHJ6 478 aa14.8□□□□□ -0.04
USP28-208ENST00000540438 PADI1Q9ULC6 663 aa14.8□□□□□ -0.04
USP28-208ENST00000540438 LOXL2Q9Y4K0 774 aa14.8□□□□□ -0.04
USP28-208ENST00000540438 BPNT1O95861 308 aa14.79□□□□□ -0.04
USP28-208ENST00000540438 SFTPBP07988 381 aa14.79□□□□□ -0.04
USP28-208ENST00000540438 ZBTB25P24278 435 aa14.79□□□□□ -0.04
USP28-208ENST00000540438 EIF1P41567 113 aaKnown RBP14.79□□□□□ -0.04
USP28-208ENST00000540438 CLDN15P56746 228 aa14.79□□□□□ -0.04
USP28-208ENST00000540438 FXYD4P59646 89 aa14.79□□□□□ -0.04
USP28-208ENST00000540438 H3F3AP84243 136 aa14.79□□□□□ -0.04
USP28-208ENST00000540438 ZXDAP98168 799 aa14.79□□□□□ -0.04
USP28-208ENST00000540438 CEACAM16Q2WEN9 425 aa14.79□□□□□ -0.04
USP28-208ENST00000540438 CRIP3Q6Q6R5 217 aa14.79□□□□□ -0.04
USP28-208ENST00000540438 PPP1R32Q7Z5V6 425 aa14.79□□□□□ -0.04
USP28-208ENST00000540438 THOC3Q96J01 351 aaKnown RBP14.79□□□□□ -0.04
USP28-208ENST00000540438 SLC25A21Q9BQT8 299 aaPredicted RBP14.79□□□□□ -0.04
USP28-208ENST00000540438 SLC17A5Q9NRA2 495 aa14.79□□□□□ -0.04
USP28-208ENST00000540438 MCTS1Q9ULC4 181 aaKnown RBP14.79□□□□□ -0.04
USP28-208ENST00000540438 F5H0A9 414 aaPredicted RBP14.79□□□□□ -0.04
USP28-208ENST00000540438 HTR5AP47898 357 aa14.79□□□□□ -0.04
USP28-208ENST00000540438 PIGYQ3MUY2 71 aa14.79□□□□□ -0.04
USP28-208ENST00000540438 SLC25A53Q5H9E4 307 aa14.79□□□□□ -0.04
USP28-208ENST00000540438 LYG2Q86SG7 212 aa14.79□□□□□ -0.04
USP28-208ENST00000540438 OR5M8Q8NGP6 311 aa14.79□□□□□ -0.04
USP28-208ENST00000540438 OR51F2Q8NH61 342 aa14.79□□□□□ -0.04
USP28-208ENST00000540438 OR10D3Q8NH80 312 aa14.79□□□□□ -0.04
USP28-208ENST00000540438 CT55Q8WUE5 264 aa14.79□□□□□ -0.04
USP28-208ENST00000540438 OR10A2Q9H208 303 aa14.79□□□□□ -0.04
USP28-208ENST00000540438 C5orf66Q9H5L9 145 aa14.79□□□□□ -0.04
USP28-208ENST00000540438 FOXJ2Q9P0K8 574 aa14.79□□□□□ -0.04
USP28-208ENST00000540438 TCFL5Q9UL49 500 aa14.79□□□□□ -0.04
USP28-208ENST00000540438 H3BUI4 141 aa14.79□□□□□ -0.04
USP28-208ENST00000540438 HPNP05981 417 aa14.79□□□□□ -0.04
USP28-208ENST00000540438 DUSP1P28562 367 aa14.79□□□□□ -0.04
USP28-208ENST00000540438 DSCR4P56555 118 aaPredicted RBP14.79□□□□□ -0.04
USP28-208ENST00000540438 S100A10P60903 97 aa14.79□□□□□ -0.04
USP28-208ENST00000540438 GJC3Q8NFK1 279 aa14.79□□□□□ -0.04
USP28-208ENST00000540438 THRSPQ92748 146 aa14.79□□□□□ -0.04
USP28-208ENST00000540438 FOXRED1Q96CU9 486 aaPredicted RBP14.79□□□□□ -0.04
USP28-208ENST00000540438 PIGQQ9BRB3 760 aa14.79□□□□□ -0.04
USP28-208ENST00000540438 SLC26A1Q9H2B4 701 aa14.79□□□□□ -0.04
USP28-208ENST00000540438 P4HTMQ9NXG6 502 aa14.79□□□□□ -0.04
USP28-208ENST00000540438 EMC3Q9P0I2 261 aa14.79□□□□□ -0.04
USP28-208ENST00000540438 RABL2AQ9UBK7 228 aaPredicted RBP14.79□□□□□ -0.04
USP28-208ENST00000540438 RABL2BQ9UNT1 228 aa14.79□□□□□ -0.04
USP28-208ENST00000540438 hCG_1807616A0A1W2PRN6 198 aa14.78□□□□□ -0.04
USP28-208ENST00000540438 APOC3P02656 99 aa14.78□□□□□ -0.04
USP28-208ENST00000540438 CD74P04233 296 aa14.78□□□□□ -0.04
USP28-208ENST00000540438 ACER2Q5QJU3 275 aa14.78□□□□□ -0.04
USP28-208ENST00000540438 SIGIRRQ6IA17 410 aa14.78□□□□□ -0.04
USP28-208ENST00000540438 AAED1Q7RTV5 226 aa14.78□□□□□ -0.04
USP28-208ENST00000540438 PRRT1Q99946 306 aa14.78□□□□□ -0.04
USP28-208ENST00000540438 ANGPTL4Q9BY76 406 aa14.78□□□□□ -0.04
USP28-208ENST00000540438 METTL8Q9H825 291 aaKnown RBP14.78□□□□□ -0.04
USP28-208ENST00000540438 PTTG3PQ9NZH4 202 aa14.78□□□□□ -0.04
USP28-208ENST00000540438 PCDHGA1Q9Y5H4 931 aa14.78□□□□□ -0.04
USP28-208ENST00000540438 CSAG2Q9Y5P2 127 aa14.78□□□□□ -0.04
USP28-208ENST00000540438 DHRS7CA6NNS2 312 aa14.78□□□□□ -0.04
USP28-208ENST00000540438 SGCEO43556 437 aa14.78□□□□□ -0.04
USP28-208ENST00000540438 JMJD7P0C870 316 aa14.78□□□□□ -0.04
USP28-208ENST00000540438 SCAND1P57086 179 aa14.78□□□□□ -0.04
USP28-208ENST00000540438 MLF1P58340 268 aa14.78□□□□□ -0.04
USP28-208ENST00000540438 ATRAIDQ6UW56 229 aa14.78□□□□□ -0.04
USP28-208ENST00000540438 OR5H2Q8NGV7 314 aa14.78□□□□□ -0.04
USP28-208ENST00000540438 KCNG3Q8TAE7 436 aa14.78□□□□□ -0.04
USP28-208ENST00000540438 PAQR8Q8TEZ7 354 aa14.78□□□□□ -0.04
USP28-208ENST00000540438 PIGCQ92535 297 aa14.78□□□□□ -0.04
USP28-208ENST00000540438 DCUN1D4Q92564 292 aa14.78□□□□□ -0.04
USP28-208ENST00000540438 SIGLEC12Q96PQ1 595 aa14.78□□□□□ -0.04
USP28-208ENST00000540438 CALHM2Q9HA72 323 aa14.78□□□□□ -0.04
USP28-208ENST00000540438 SCPEP1Q9HB40 452 aa14.78□□□□□ -0.04
USP28-208ENST00000540438 PLEKHJ1Q9NW61 149 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms