RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 SLC25A28Q96A46 364 aa10.36□□□□□ -0.75
CLIP1-208ENST00000537004 ADAT3Q96EY9 351 aaPredicted RBP10.36□□□□□ -0.75
CLIP1-208ENST00000537004 MARVELD1Q9BSK0 173 aa10.36□□□□□ -0.75
CLIP1-208ENST00000537004 KCNK15Q9H427 330 aa10.36□□□□□ -0.75
CLIP1-208ENST00000537004 CGGBP1Q9UFW8 167 aaPredicted RBP10.36□□□□□ -0.75
CLIP1-208ENST00000537004 CENPXA8MT69 81 aa10.36□□□□□ -0.75
CLIP1-208ENST00000537004 ORC5O43913 435 aa10.36□□□□□ -0.75
CLIP1-208ENST00000537004 CCNKO75909 580 aa10.36□□□□□ -0.75
CLIP1-208ENST00000537004 YES1P07947 543 aa10.36□□□□□ -0.75
CLIP1-208ENST00000537004 MNDAP41218 407 aa10.36□□□□□ -0.75
CLIP1-208ENST00000537004 EFNB2P52799 333 aa10.36□□□□□ -0.75
CLIP1-208ENST00000537004 TAS2R20P59543 309 aa10.36□□□□□ -0.75
CLIP1-208ENST00000537004 HIST1H3AP68431 136 aa10.36□□□□□ -0.75
CLIP1-208ENST00000537004 RNPS1Q15287 305 aaKnown RBP10.36□□□□□ -0.75
CLIP1-208ENST00000537004 TATDN3Q17R31 274 aa10.36□□□□□ -0.75
CLIP1-208ENST00000537004 PLA1AQ53H76 456 aa10.36□□□□□ -0.75
CLIP1-208ENST00000537004 HIST2H3PS2Q5TEC6 136 aa10.36□□□□□ -0.75
CLIP1-208ENST00000537004 FAM27BQ5VT28 67 aa10.36□□□□□ -0.75
CLIP1-208ENST00000537004 ANKRD16Q6P6B7 361 aa10.36□□□□□ -0.75
CLIP1-208ENST00000537004 TFAP2EQ6VUC0 442 aa10.36□□□□□ -0.75
CLIP1-208ENST00000537004 HIST2H3AQ71DI3 136 aa10.36□□□□□ -0.75
CLIP1-208ENST00000537004 ABHD12BQ7Z5M8 362 aaPredicted RBP10.36□□□□□ -0.75
CLIP1-208ENST00000537004 COMMD2Q86X83 199 aa10.36□□□□□ -0.75
CLIP1-208ENST00000537004 JAGN1Q8N5M9 183 aa10.36□□□□□ -0.75
CLIP1-208ENST00000537004 OR6M1Q8NGM8 313 aa10.36□□□□□ -0.75
CLIP1-208ENST00000537004 OR52I2Q8NH67 350 aa10.36□□□□□ -0.75
CLIP1-208ENST00000537004 FCAMRQ8WWV6 532 aa10.36□□□□□ -0.75
CLIP1-208ENST00000537004 CREB3L1Q96BA8 519 aa10.36□□□□□ -0.75
CLIP1-208ENST00000537004 PLEKHA1Q9HB21 404 aa10.36□□□□□ -0.75
CLIP1-208ENST00000537004 CRLF2Q9HC73 371 aa10.36□□□□□ -0.75
CLIP1-208ENST00000537004 GLRX2Q9NS18 164 aa10.36□□□□□ -0.75
CLIP1-208ENST00000537004 ELOVL5Q9NYP7 299 aa10.36□□□□□ -0.75
CLIP1-208ENST00000537004 ZNF319Q9P2F9 582 aa10.36□□□□□ -0.75
CLIP1-208ENST00000537004 NDRG3Q9UGV2 375 aa10.36□□□□□ -0.75
CLIP1-208ENST00000537004 TMEM272A0A1B0GTI8 110 aa10.35□□□□□ -0.75
CLIP1-208ENST00000537004 XRCC3O43542 346 aa10.35□□□□□ -0.75
CLIP1-208ENST00000537004 TPPPO94811 219 aa10.35□□□□□ -0.75
CLIP1-208ENST00000537004 ANOS1P23352 680 aa10.35□□□□□ -0.75
CLIP1-208ENST00000537004 MRPS10P82664 201 aaKnown RBP10.35□□□□□ -0.75
CLIP1-208ENST00000537004 KLF9Q13886 244 aaPredicted RBP10.35□□□□□ -0.75
CLIP1-208ENST00000537004 ALKBH2Q6NS38 261 aa10.35□□□□□ -0.75
CLIP1-208ENST00000537004 FAM57BQ71RH2 274 aa10.35□□□□□ -0.75
CLIP1-208ENST00000537004 GPR137CQ8N3F9 429 aa10.35□□□□□ -0.75
CLIP1-208ENST00000537004 C15orf40Q8WUR7 153 aa10.35□□□□□ -0.75
CLIP1-208ENST00000537004 ALKBH3Q96Q83 286 aaPredicted RBP10.35□□□□□ -0.75
CLIP1-208ENST00000537004 GPR84Q9NQS5 396 aa10.35□□□□□ -0.75
CLIP1-208ENST00000537004 SLC17A5Q9NRA2 495 aa10.35□□□□□ -0.75
CLIP1-208ENST00000537004 PLEKHA6Q9Y2H5 1048 aa10.35□□□□□ -0.75
CLIP1-208ENST00000537004 PRRC2AP48634 2157 aaKnown RBP10.35□□□□□ -0.75
CLIP1-208ENST00000537004 LOC390937A0A1W2PQ73 354 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 HMX3A6NHT5 357 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 KRT33AO76009 404 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 IGHV3-9P01782 118 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 THBDP07204 575 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 PTHLHP12272 177 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 ARSBP15848 533 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 ZNF20P17024 532 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 BDKRB2P30411 391 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 ELFN2Q5R3F8 820 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 C1orf100Q5SVJ3 147 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 ZNF813Q6ZN06 617 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 BIVMQ86UB2 503 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 CXorf67Q86X51 503 aaPredicted RBP10.34□□□□□ -0.75
CLIP1-208ENST00000537004 LYPD6Q86Y78 171 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 OR1M1Q8NGA1 313 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 OR5D14Q8NGL3 314 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 OR6F1Q8NGZ6 308 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 UBASH3BQ8TF42 649 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 FBXO17Q96EF6 278 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 C7orf50Q9BRJ6 194 aaKnown RBP10.34□□□□□ -0.75
CLIP1-208ENST00000537004 BCO1Q9HAY6 547 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 TMEM38BQ9NVV0 291 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 PRSS50Q9UI38 385 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 GGT3PA6NGU5 568 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 DEFB108AA8MXU0 73 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 F5H5K5 113 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 INMT-MINDY4F8WBC2 141 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 MT-ND4P03905 459 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 TRAPPC2P0DI81 140 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 TRAPPC2BP0DI82 140 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 CCL1P22362 96 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 DYRK1AQ13627 763 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 GFOD2Q3B7J2 385 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 SMUG1Q53HV7 270 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 GABRG1Q8N1C3 465 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 PHF21AQ96BD5 680 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 FOXRED1Q96CU9 486 aaPredicted RBP10.34□□□□□ -0.75
CLIP1-208ENST00000537004 SORCS2Q96PQ0 1159 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 HS3ST6Q96QI5 342 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 SOX7Q9BT81 388 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 DPAGT1Q9H3H5 408 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 TMEM138Q9NPI0 162 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 DIABLOQ9NR28 239 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 PLEK2Q9NYT0 353 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 ALG5Q9Y673 324 aa10.34□□□□□ -0.75
CLIP1-208ENST00000537004 IGKV3D-15A0A087WSY6 115 aa10.33□□□□□ -0.76
CLIP1-208ENST00000537004 CIB4A0PJX0 185 aa10.33□□□□□ -0.76
CLIP1-208ENST00000537004 KDM4BO94953 1096 aa10.33□□□□□ -0.76
CLIP1-208ENST00000537004 ECDO95905 644 aaPredicted RBP10.33□□□□□ -0.76
CLIP1-208ENST00000537004 RAB3AP20336 220 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms