RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 FN3KRPQ9HA64 309 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 FGF20Q9NP95 211 aaPredicted RBP11.23□□□□□ -0.61
VPS28-210ENST00000529182 C14orf119Q9NWQ9 140 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 MPC1Q9Y5U8 109 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 HSPE1-MOB4S4R3N1 261 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 V9GYS6 101 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 C2CD3Q4AC94 2353 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 NAV3Q8IVL0 2385 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 A6NLC8 198 aa11.22□□□□□ -0.61
VPS28-210ENST00000529182 A8MV72 311 aaPredicted RBP11.22□□□□□ -0.61
VPS28-210ENST00000529182 E9PI62 339 aa11.22□□□□□ -0.61
VPS28-210ENST00000529182 C3orf80F5H4A9 247 aa11.22□□□□□ -0.61
VPS28-210ENST00000529182 IFNL4K9M1U5 179 aa11.22□□□□□ -0.61
VPS28-210ENST00000529182 SYT7O43581 403 aa11.22□□□□□ -0.61
VPS28-210ENST00000529182 XPNPEP2O43895 674 aa11.22□□□□□ -0.61
VPS28-210ENST00000529182 LMX1BO60663 402 aa11.22□□□□□ -0.61
VPS28-210ENST00000529182 MTRF1O75570 445 aaKnown RBP11.22□□□□□ -0.61
VPS28-210ENST00000529182 HTR1AP08908 422 aa11.22□□□□□ -0.61
VPS28-210ENST00000529182 LIMS3P0CW19 117 aa11.22□□□□□ -0.61
VPS28-210ENST00000529182 LIMS4P0CW20 117 aa11.22□□□□□ -0.61
VPS28-210ENST00000529182 IRF2P14316 349 aa11.22□□□□□ -0.61
VPS28-210ENST00000529182 ATP6V1B1P15313 513 aa11.22□□□□□ -0.61
VPS28-210ENST00000529182 CCL1P22362 96 aa11.22□□□□□ -0.61
VPS28-210ENST00000529182 ETV1P50549 477 aa11.22□□□□□ -0.61
VPS28-210ENST00000529182 ACTA2P62736 377 aa11.22□□□□□ -0.61
VPS28-210ENST00000529182 ACTG2P63267 376 aa11.22□□□□□ -0.61
VPS28-210ENST00000529182 MZT1Q08AG7 82 aa11.22□□□□□ -0.61
VPS28-210ENST00000529182 ZNF154Q13106 437 aa11.22□□□□□ -0.61
VPS28-210ENST00000529182 MOB3CQ70IA8 216 aa11.22□□□□□ -0.61
VPS28-210ENST00000529182 DOK3Q7L591 496 aa11.22□□□□□ -0.61
VPS28-210ENST00000529182 KCTD20Q7Z5Y7 419 aa11.22□□□□□ -0.61
VPS28-210ENST00000529182 LRRC28Q86X40 367 aaPredicted RBP11.22□□□□□ -0.61
VPS28-210ENST00000529182 LINC01356Q8N9X3 169 aa11.22□□□□□ -0.61
VPS28-210ENST00000529182 GGHQ92820 318 aa11.22□□□□□ -0.61
VPS28-210ENST00000529182 C1orf159Q96HA4 380 aa11.22□□□□□ -0.61
VPS28-210ENST00000529182 RNF170Q96K19 258 aa11.22□□□□□ -0.61
VPS28-210ENST00000529182 MICU1Q9BPX6 476 aa11.22□□□□□ -0.61
VPS28-210ENST00000529182 INPP5EQ9NRR6 644 aa11.22□□□□□ -0.61
VPS28-210ENST00000529182 GPR173Q9NS66 373 aa11.22□□□□□ -0.61
VPS28-210ENST00000529182 FRRS1LQ9P0K9 344 aa11.22□□□□□ -0.61
VPS28-210ENST00000529182 RNF7Q9UBF6 113 aa11.22□□□□□ -0.61
VPS28-210ENST00000529182 ENPP5Q9UJA9 477 aa11.22□□□□□ -0.61
VPS28-210ENST00000529182 PPIAL4EA0A075B759 164 aa11.21□□□□□ -0.61
VPS28-210ENST00000529182 A0A1B0GVI7 797 aa11.21□□□□□ -0.61
VPS28-210ENST00000529182 LOC107986453A0A1B0GWG9 222 aa11.21□□□□□ -0.61
VPS28-210ENST00000529182 hCG_1807616A0A1W2PRN6 198 aa11.21□□□□□ -0.61
VPS28-210ENST00000529182 PPIAL4DF5H284 164 aa11.21□□□□□ -0.61
VPS28-210ENST00000529182 PPIAL4FP0DN26 164 aa11.21□□□□□ -0.61
VPS28-210ENST00000529182 EGR1P18146 543 aa11.21□□□□□ -0.61
VPS28-210ENST00000529182 CD80P33681 288 aa11.21□□□□□ -0.61
VPS28-210ENST00000529182 MDH2P40926 338 aaKnown RBP11.21□□□□□ -0.61
VPS28-210ENST00000529182 GPM6AP51674 278 aa11.21□□□□□ -0.61
VPS28-210ENST00000529182 SEC61A1P61619 476 aaKnown RBP11.21□□□□□ -0.61
VPS28-210ENST00000529182 RIPK1Q13546 671 aa11.21□□□□□ -0.61
VPS28-210ENST00000529182 PLCXD3Q63HM9 321 aa11.21□□□□□ -0.61
VPS28-210ENST00000529182 SFRP4Q6FHJ7 346 aaPredicted RBP11.21□□□□□ -0.61
VPS28-210ENST00000529182 FAM166AQ6J272 317 aa11.21□□□□□ -0.61
VPS28-210ENST00000529182 IZUMO2Q6UXV1 221 aa11.21□□□□□ -0.61
VPS28-210ENST00000529182 KCTD8Q6ZWB6 473 aa11.21□□□□□ -0.61
VPS28-210ENST00000529182 KRT74Q7RTS7 529 aa11.21□□□□□ -0.61
VPS28-210ENST00000529182 C1orf87Q8N0U7 546 aa11.21□□□□□ -0.61
VPS28-210ENST00000529182 SYS1Q8N2H4 156 aa11.21□□□□□ -0.61
VPS28-210ENST00000529182 DEFB108BQ8NET1 73 aa11.21□□□□□ -0.61
VPS28-210ENST00000529182 FBLIM1Q8WUP2 373 aa11.21□□□□□ -0.61
VPS28-210ENST00000529182 RPL3LQ92901 407 aaKnown RBP11.21□□□□□ -0.61
VPS28-210ENST00000529182 MRPL48Q96GC5 212 aaKnown RBP11.21□□□□□ -0.61
VPS28-210ENST00000529182 HIST1H2AAQ96QV6 131 aa11.21□□□□□ -0.61
VPS28-210ENST00000529182 RTL8AQ9BWD3 113 aa11.21□□□□□ -0.61
VPS28-210ENST00000529182 JAM3Q9BX67 310 aa11.21□□□□□ -0.61
VPS28-210ENST00000529182 TMEM165Q9HC07 324 aa11.21□□□□□ -0.61
VPS28-210ENST00000529182 PPIAL4AQ9Y536 164 aa11.21□□□□□ -0.61
VPS28-210ENST00000529182 CEACAM18A8MTB9 384 aa11.2□□□□□ -0.62
VPS28-210ENST00000529182 B4DSR2 109 aa11.2□□□□□ -0.62
VPS28-210ENST00000529182 H0YJX3 145 aa11.2□□□□□ -0.62
VPS28-210ENST00000529182 CDIPTO14735 213 aa11.2□□□□□ -0.62
VPS28-210ENST00000529182 NRASP01111 189 aa11.2□□□□□ -0.62
VPS28-210ENST00000529182 UBCP0CG48 685 aaKnown RBP11.2□□□□□ -0.62
VPS28-210ENST00000529182 DCKP27707 260 aa11.2□□□□□ -0.62
VPS28-210ENST00000529182 ALKBH1Q13686 389 aaKnown RBP11.2□□□□□ -0.62
VPS28-210ENST00000529182 CEACAM21Q3KPI0 293 aa11.2□□□□□ -0.62
VPS28-210ENST00000529182 TMEM155Q4W5P6 130 aa11.2□□□□□ -0.62
VPS28-210ENST00000529182 ZBTB37Q5TC79 503 aa11.2□□□□□ -0.62
VPS28-210ENST00000529182 OR2G6Q5TZ20 316 aa11.2□□□□□ -0.62
VPS28-210ENST00000529182 FDX2Q6P4F2 183 aa11.2□□□□□ -0.62
VPS28-210ENST00000529182 WDR82Q6UXN9 313 aa11.2□□□□□ -0.62
VPS28-210ENST00000529182 Q6ZSR3 168 aa11.2□□□□□ -0.62
VPS28-210ENST00000529182 KLHL36Q8N4N3 616 aa11.2□□□□□ -0.62
VPS28-210ENST00000529182 SPICQ8N5J4 248 aa11.2□□□□□ -0.62
VPS28-210ENST00000529182 GCSAMQ8N6F7 178 aa11.2□□□□□ -0.62
VPS28-210ENST00000529182 BPIFB6Q8NFQ5 453 aa11.2□□□□□ -0.62
VPS28-210ENST00000529182 OR10AC1Q8NH08 325 aa11.2□□□□□ -0.62
VPS28-210ENST00000529182 LRRC29Q8WV35 223 aa11.2□□□□□ -0.62
VPS28-210ENST00000529182 RAB39BQ96DA2 213 aa11.2□□□□□ -0.62
VPS28-210ENST00000529182 TMEM80Q96HE8 168 aa11.2□□□□□ -0.62
VPS28-210ENST00000529182 TMEM246Q9BRR3 403 aa11.2□□□□□ -0.62
VPS28-210ENST00000529182 VCX3BQ9H321 246 aa11.2□□□□□ -0.62
VPS28-210ENST00000529182 PATZ1Q9HBE1 687 aaKnown RBP11.2□□□□□ -0.62
VPS28-210ENST00000529182 ABCB9Q9NP78 766 aa11.2□□□□□ -0.62
VPS28-210ENST00000529182 CLEC2DQ9UHP7 191 aa11.2□□□□□ -0.62
VPS28-210ENST00000529182 KCNS2Q9ULS6 477 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms