RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 RPL19P84098 196 aaKnown RBP6.94□□□□□ -1.3
LIMCH1-219ENST00000514096 ATXN7L3Q14CW9 347 aaPredicted RBP6.94□□□□□ -1.3
LIMCH1-219ENST00000514096 HSPB2Q16082 182 aa6.94□□□□□ -1.3
LIMCH1-219ENST00000514096 PYY3Q5JQD4 70 aa6.94□□□□□ -1.3
LIMCH1-219ENST00000514096 RIPPLY2Q5TAB7 128 aa6.94□□□□□ -1.3
LIMCH1-219ENST00000514096 ZNF474Q6S9Z5 364 aaPredicted RBP6.94□□□□□ -1.3
LIMCH1-219ENST00000514096 KLHL24Q6TFL4 600 aa6.94□□□□□ -1.3
LIMCH1-219ENST00000514096 STXBP6Q8NFX7 210 aa6.94□□□□□ -1.3
LIMCH1-219ENST00000514096 OR51L1Q8NGJ5 315 aa6.94□□□□□ -1.3
LIMCH1-219ENST00000514096 TMEM255BQ8WV15 326 aa6.94□□□□□ -1.3
LIMCH1-219ENST00000514096 TMEM203Q969S6 136 aa6.94□□□□□ -1.3
LIMCH1-219ENST00000514096 OCSTAMPQ9BR26 566 aa6.94□□□□□ -1.3
LIMCH1-219ENST00000514096 CHST11Q9NPF2 352 aa6.94□□□□□ -1.3
LIMCH1-219ENST00000514096 MRPL22Q9NWU5 206 aaKnown RBP6.94□□□□□ -1.3
LIMCH1-219ENST00000514096 A0A1B0GVC2 190 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 SMCO3A2RU48 225 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 CDHR4A6H8M9 788 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 A6NIN4 97 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 NME4O00746 187 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 AK1P00568 194 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 TRAPPC2P0DI81 140 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 TRAPPC2BP0DI82 140 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 FCGR1AP12314 374 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 OPRM1P35372 400 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 FRKP42685 505 aaPredicted RBP6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 ALDH3B1P43353 468 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 IDH3GP51553 393 aaPredicted RBP6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 MVDP53602 400 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 GAS1P54826 345 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 SMN1Q16637 294 aaKnown RBP6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 CPEB4Q17RY0 729 aaKnown RBP eCLIP6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 LGALSLQ3ZCW2 172 aaPredicted RBP6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 CYBRD1Q53TN4 286 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 TMPPEQ6ZT21 453 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 ESPNLQ6ZVH7 1005 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 FAM214BQ7L5A3 538 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 C17orf47Q8NEP4 570 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 PROKR2Q8NFJ6 384 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 OR10A7Q8NGE5 316 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 OR4D11Q8NGI4 311 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 OR1L6Q8NGR2 347 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 ASB9Q96DX5 294 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 FNDC11Q9BVV2 318 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 YTHDF1Q9BYJ9 559 aaKnown RBP6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 OR51V1Q9H2C8 321 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 GAL3ST2Q9H3Q3 398 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 SMURF1Q9HCE7 757 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 SH2D2AQ9NP31 389 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 MEPEQ9NQ76 525 aaPredicted RBP6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 A0A1W2PN81 502 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 OR14I1A6ND48 311 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 SLC1A7O00341 560 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 CXCR6O00574 342 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 IGHG3P01860 377 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 IFNA6P05013 189 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 RPLP1P05386 114 aaKnown RBP6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 CHRNA7P36544 502 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 KIR2DL2P43627 348 aaPredicted RBP6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 B3GALT5-AS1P59052 145 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 CXCR4P61073 352 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 FADDQ13158 208 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 RNASE10Q5GAN6 216 aaKnown RBP6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 C1orf140Q5VVS0 124 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 ZNF730Q6ZMV8 503 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 GRINAQ7Z429 371 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 GTPBP8Q8N3Z3 284 aaPredicted RBP6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 Q8N402 240 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 OR11H4Q8NGC9 324 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 KISS1RQ969F8 398 aaPredicted RBP6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 MUL1Q969V5 352 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 APH1AQ96BI3 265 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 DDIT4LQ96D03 193 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 STARD4Q96DR4 205 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 SLC38A2Q96QD8 506 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 RHNO1Q9BSD3 238 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 CCDC32Q9BV29 185 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 CALML5Q9NZT1 146 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 SLC35A3Q9Y2D2 325 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 PRORSD1PA6NEY8 169 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 C16orf97H3BN30 126 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 CYB5BO43169 146 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 GNG7O60262 68 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 HTR2AP28223 471 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 ART1P52961 327 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 GGNQ86UU5 652 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 PTOV1Q86YD1 416 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 NRMQ8IXM6 262 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 OR2G2Q8NGZ5 317 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 TAAR8Q969N4 342 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 ZNF837Q96EG3 531 aaPredicted RBP6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 PLPPR2Q96GM1 343 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 ZDHHC8Q9ULC8 765 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 HIF3AQ9Y2N7 669 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 A3GALT2U3KPV4 340 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 OTOGQ6ZRI0 2925 aa6.93□□□□□ -1.3
LIMCH1-219ENST00000514096 VPS13CQ709C8 3753 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 A0A1W2PPH5 198 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 C5orf51A6NDU8 294 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 FBLL1A6NHQ2 334 aaKnown RBP6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms