RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 OPN1SWP03999 348 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 ERCC1P07992 297 aaPredicted RBP2.97□□□□□ -1.93
NUP54-212ENST00000513248 CD79AP11912 226 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 PRG2P13727 222 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 ETS2P15036 469 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 C4BPBP20851 252 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 RPS4Y1P22090 263 aaKnown RBP2.97□□□□□ -1.93
NUP54-212ENST00000513248 MTPNP58546 118 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 RBBP4Q09028 425 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 NPRL3Q12980 569 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 PMS2P3Q13401 168 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 RAB35Q15286 201 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 GUSBP1Q15486 140 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 OR1Q1Q15612 314 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 CLEC12BQ2HXU8 276 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 PAGE3Q5JUK9 113 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 TSPO2Q5TGU0 170 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 ULK3Q6PHR2 472 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 TTC33Q6PID6 262 aaPredicted RBP2.97□□□□□ -1.93
NUP54-212ENST00000513248 CLEC2AQ6UVW9 174 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 C5orf46Q6UWT4 87 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 NET1Q7Z628 596 aaPredicted RBP2.97□□□□□ -1.93
NUP54-212ENST00000513248 BIVMQ86UB2 503 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 SNX32Q86XE0 403 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 SLC30A8Q8IWU4 369 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 GABRG1Q8N1C3 465 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 LRRC75A-AS1Q8N1F1 130 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 KDM8Q8N371 416 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 Q8N377 158 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 C17orf78Q8N4C9 275 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 ZNF433Q8N7K0 673 aaPredicted RBP2.97□□□□□ -1.93
NUP54-212ENST00000513248 TMEM99Q8N816 258 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 FAM71CQ8NEG0 241 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 OR6N1Q8NGY5 312 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 MFSD8Q8NHS3 518 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 TPD52L3Q96J77 140 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 ALKBH3Q96Q83 286 aaPredicted RBP2.97□□□□□ -1.93
NUP54-212ENST00000513248 MCHR1Q99705 422 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 SIKE1Q9BRV8 207 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 ULBP2Q9BZM5 246 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 CXXC4Q9H2H0 198 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 TMEM38AQ9H6F2 299 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 RNF121Q9H920 327 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 BCL2L10Q9HD36 194 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 DYNLRB1Q9NP97 96 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 SLC7A10Q9NS82 523 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 GID8Q9NWU2 228 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 VAPAQ9P0L0 249 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 MOKQ9UQ07 419 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 POFUT2Q9Y2G5 429 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 FLVCR1Q9Y5Y0 555 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 NIPBLQ6KC79 2804 aaeCLIP2.97□□□□□ -1.93
NUP54-212ENST00000513248 NBASA2RRP1 2371 aa2.97□□□□□ -1.93
NUP54-212ENST00000513248 SPTBN1Q01082 2364 aaKnown RBP2.96□□□□□ -1.94
NUP54-212ENST00000513248 NCOA6Q14686 2063 aaPredicted RBP2.96□□□□□ -1.94
NUP54-212ENST00000513248 CNTRLQ7Z7A1 2325 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 NCKAP5O14513 1909 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 LOC100653049A0A140TA62 436 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 hCG_38984A0A1B0GV85 526 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 DPRXA6NFQ7 191 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 BBIP1A8MTZ0 92 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 M0QX08 132 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 M0R3G1 203 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 KPNA4O00629 521 aaPredicted RBP2.96□□□□□ -1.94
NUP54-212ENST00000513248 RNF13O43567 381 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 TPST2O60704 377 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 CCDC22O60826 627 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 ENTPD5O75356 428 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 UPK3AO75631 287 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 KRT34O76011 436 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 RAB36O95755 333 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 RLN1P04808 185 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 ADORA3P0DMS8 318 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 GATA1P15976 413 aaPredicted RBP2.96□□□□□ -1.94
NUP54-212ENST00000513248 H2AFXP16104 143 aaPredicted RBP2.96□□□□□ -1.94
NUP54-212ENST00000513248 GPX2P18283 190 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 COX5AP20674 150 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 PAX7P23759 505 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 GRPRP30550 384 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 ACVR1BP36896 505 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 ACAA2P42765 397 aaKnown RBP2.96□□□□□ -1.94
NUP54-212ENST00000513248 GUCA1AP43080 201 aaPredicted RBP2.96□□□□□ -1.94
NUP54-212ENST00000513248 CSNK1A1P48729 337 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 IDH3GP51553 393 aaPredicted RBP2.96□□□□□ -1.94
NUP54-212ENST00000513248 SH3BGRP55822 239 aaPredicted RBP2.96□□□□□ -1.94
NUP54-212ENST00000513248 TAS2R41P59536 307 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 SNRPD2P62316 118 aaKnown RBP2.96□□□□□ -1.94
NUP54-212ENST00000513248 GALK2Q01415 458 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 SLC17A1Q14916 467 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 GABRA6Q16445 453 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 NRF1Q16656 503 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 CEACAM16Q2WEN9 425 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 TRMT5Q32P41 509 aaKnown RBP2.96□□□□□ -1.94
NUP54-212ENST00000513248 IQCCQ4KMZ1 466 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 LRRC23Q53EV4 343 aaPredicted RBP2.96□□□□□ -1.94
NUP54-212ENST00000513248 HIKESHIQ53FT3 197 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 METTL21CQ5VZV1 264 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 REP15Q6BDI9 236 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 ERICH5Q6P6B1 374 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 PODNL1Q6PEZ8 512 aa2.96□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms