RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 BSXQ3C1V8 233 aa7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 GGTA1PQ4G0N0 100 aa7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 TMEM207Q6UWW9 146 aa7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 LRRC18Q8N456 261 aa7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 OR4C16Q8NGL9 310 aa7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 OR2A14Q96R47 310 aa7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 SPAG8Q99932 426 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 CHST8Q9H2A9 424 aa7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 A0A1B0GWA3 101 aa7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 SSSCA1O60232 199 aa7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 TIMP2P16035 220 aa7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 CSNK1EP49674 416 aaKnown RBP7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 SKP2Q13309 424 aa7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 PRAMEF20Q5VT98 475 aa7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 SLCO4C1Q6ZQN7 724 aa7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 GDF7Q7Z4P5 450 aa7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 LRRC3BQ96PB8 259 aa7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 C1QTNF3Q9BXJ4 246 aa7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 AP5S1Q9NUS5 200 aa7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 GNG12Q9UBI6 72 aa7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 TRGV8A0A0C4DH27 118 aa7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 OOEPA6NGQ2 149 aa7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 TNFRSF10CO14798 259 aa7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 ZFAND5O76080 213 aa7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 IGHG1P01857 330 aa7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 PRLHRP49683 370 aa7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 ARF6P62330 175 aa7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 CSNK1G2P78368 415 aa7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 DOC2BQ14184 412 aa7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 ZNF750Q32MQ0 723 aa7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 C9orf135Q5VTT2 229 aa7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 CYHR1Q6ZMK1 362 aa7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 OR13G1Q8NGZ3 307 aa7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 RLN3Q8WXF3 142 aa7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 ST6GAL2Q96JF0 529 aa7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 PLA2G12AQ9BZM1 189 aa7.91□□□□□ -1.14
LIMCH1-218ENST00000513024 LOC102725191A0A1B0GVB3 256 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 SELENOFO60613 162 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 F2RP25116 425 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 HTR1DP28221 377 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 OR1D4P47884 311 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 PAFAH1B2P68402 229 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 KIR2DS3Q14952 304 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 FAM78AQ5JUQ0 283 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 RIPPLY2Q5TAB7 128 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 MRM1Q6IN84 353 aaKnown RBP7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 ACSM5Q6NUN0 579 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 PAQR9Q6ZVX9 377 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 C1orf210Q8IVY1 113 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 YIPF6Q96EC8 236 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 SLC35E1Q96K37 410 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 SHARPINQ9H0F6 387 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 GLIPR2Q9H4G4 154 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 WDR76Q9H967 626 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 NAGKQ9UJ70 344 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 MMP17Q9ULZ9 603 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 HS3ST3A1Q9Y663 406 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 SCN9AQ15858 1988 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 A0A0J9YY10 115 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 GDF1P27539 372 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 MPLP40238 635 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 P2RY2P41231 377 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 C10orf126Q8N4M7 172 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 KLHDC9Q8NEP7 349 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 SMIM4Q8WVI0 70 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 BCL2L2Q92843 193 aaPredicted RBP7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 NEURL3Q96EH8 262 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 ULBP2Q9BZM5 246 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 BARX1Q9HBU1 254 aaPredicted RBP7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 ACER3Q9NUN7 267 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 FOCADQ5VW36 1801 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 LOXHD1Q8IVV2 1947 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 SPINK4O60575 86 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 NEURL1O76050 574 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 WNT11O96014 354 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 OR5G3P0C626 314 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 CPEP16870 476 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 CSNK1DP48730 415 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 DLK1P80370 383 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 SSX1Q16384 188 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 H2BFWTQ7Z2G1 175 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 NKAIN4Q8IVV8 208 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 CNEP1R1Q8N9A8 125 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 TEAD3Q99594 435 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 MENTQ9BUN1 341 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 ZNF426Q9BUY5 554 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 WSB2Q9NYS7 404 aaPredicted RBP7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 FOXJ3Q9UPW0 622 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 FUT9Q9Y231 359 aa7.9□□□□□ -1.14
LIMCH1-218ENST00000513024 ADAMTSL1Q8N6G6 1762 aa7.9□□□□□ -1.15
LIMCH1-218ENST00000513024 MASP2O00187 686 aa7.9□□□□□ -1.15
LIMCH1-218ENST00000513024 TAPBPO15533 448 aa7.9□□□□□ -1.15
LIMCH1-218ENST00000513024 SCRG1O75711 98 aa7.9□□□□□ -1.15
LIMCH1-218ENST00000513024 CD3DP04234 171 aa7.9□□□□□ -1.15
LIMCH1-218ENST00000513024 APLNRP35414 380 aa7.9□□□□□ -1.15
LIMCH1-218ENST00000513024 SUB1P53999 127 aaKnown RBP eCLIP7.9□□□□□ -1.15
LIMCH1-218ENST00000513024 HES3Q5TGS1 186 aa7.9□□□□□ -1.15
LIMCH1-218ENST00000513024 SLC16A11Q8NCK7 471 aa7.9□□□□□ -1.15
LIMCH1-218ENST00000513024 OR4S1Q8NGB4 309 aa7.9□□□□□ -1.15
LIMCH1-218ENST00000513024 OR52B4Q8NGK2 314 aa7.9□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms