RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 M0R135 149 aa10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 B4GALT3O60512 393 aa10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 METAP1P53582 386 aa10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 NKAIN2Q5VXU1 208 aa10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 C9orf62Q8N4C0 152 aa10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 OR5C1Q8NGR4 320 aa10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 PELI1Q96FA3 418 aa10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 ZNF799Q96GE5 643 aa10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 GPR61Q9BZJ8 451 aa10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 TBX21Q9UL17 535 aa10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 CST7O76096 145 aa10.15□□□□□ -0.79
LIMCH1-217ENST00000512946 SLC25A5P05141 298 aaKnown RBP10.15□□□□□ -0.79
LIMCH1-217ENST00000512946 ABOP16442 354 aa10.15□□□□□ -0.79
LIMCH1-217ENST00000512946 TM4SF1P30408 202 aa10.15□□□□□ -0.79
LIMCH1-217ENST00000512946 HOXA6P31267 233 aa10.15□□□□□ -0.79
LIMCH1-217ENST00000512946 SSX1Q16384 188 aa10.15□□□□□ -0.79
LIMCH1-217ENST00000512946 COX20Q5RI15 118 aa10.15□□□□□ -0.79
LIMCH1-217ENST00000512946 ABHD17CQ6PCB6 329 aa10.15□□□□□ -0.79
LIMCH1-217ENST00000512946 MED25Q71SY5 747 aa10.15□□□□□ -0.79
LIMCH1-217ENST00000512946 PLPP6Q8IY26 295 aa10.15□□□□□ -0.79
LIMCH1-217ENST00000512946 MUC20Q8N307 709 aaPredicted RBP10.15□□□□□ -0.79
LIMCH1-217ENST00000512946 OR10G4Q8NGN3 311 aa10.15□□□□□ -0.79
LIMCH1-217ENST00000512946 OR10G9Q8NGN4 311 aa10.15□□□□□ -0.79
LIMCH1-217ENST00000512946 OR10G7Q8NGN6 311 aa10.15□□□□□ -0.79
LIMCH1-217ENST00000512946 CD99L2Q8TCZ2 262 aa10.15□□□□□ -0.79
LIMCH1-217ENST00000512946 PERPQ96FX8 193 aa10.15□□□□□ -0.79
LIMCH1-217ENST00000512946 RSRP1Q9BUV0 290 aa10.15□□□□□ -0.79
LIMCH1-217ENST00000512946 MRPL13Q9BYD1 178 aaKnown RBP10.15□□□□□ -0.79
LIMCH1-217ENST00000512946 MAGT1Q9H0U3 335 aa10.15□□□□□ -0.79
LIMCH1-217ENST00000512946 SPANXA1Q9NS26 97 aa10.15□□□□□ -0.79
LIMCH1-217ENST00000512946 DECR2Q9NUI1 292 aa10.15□□□□□ -0.79
LIMCH1-217ENST00000512946 RBPJLQ9UBG7 517 aa10.15□□□□□ -0.79
LIMCH1-217ENST00000512946 KLK11Q9UBX7 282 aa10.15□□□□□ -0.79
LIMCH1-217ENST00000512946 A0A1W2PN81 502 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 MYADML2A6NDP7 307 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 H3BVH4 76 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 PLPP2O43688 288 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 HIST1H1EP10412 219 aaKnown RBP10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 AVPR2P30518 371 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 C12orf73Q69YU5 71 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 LIAT1Q6ZQX7 453 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 BCDIN3DQ7Z5W3 292 aaKnown RBP10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 FBXL6Q8N531 539 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 OR52B4Q8NGK2 314 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 OR51E1Q8TCB6 317 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 LRRC15Q8TF66 581 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 LAT2Q9GZY6 243 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 PAM16Q9Y3D7 125 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 NEURL4Q96JN8 1562 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 TCHHQ07283 1943 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 CD70P32970 193 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 TNFRSF4P43489 277 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 LSM11P83369 360 aaKnown RBP eCLIP10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 OR8G1Q15617 311 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 ADTRPQ96IZ2 230 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 RBM38Q9H0Z9 239 aaKnown RBP10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 TXNIPQ9H3M7 391 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 ZBTB32Q9Y2Y4 487 aaPredicted RBP10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 MRPS16Q9Y3D3 137 aaKnown RBP10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 PTRH2Q9Y3E5 179 aaKnown RBP10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 KIF20BQ96Q89 1820 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 DSCR3O14972 297 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 IGHA1P01876 353 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 IGHA2P01877 340 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 DEFB110Q30KQ9 67 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 DGAT2L7PQ6IED9 249 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 USP53Q70EK8 1073 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 HSD11B1LQ7Z5J1 315 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 NAA60Q9H7X0 242 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 PEF1Q9UBV8 284 aaKnown RBP10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 ANKRD20A5PA0PJZ0 165 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 SLC2A10O95528 541 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 TBXA2RP21731 343 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 MDH2P40926 338 aaKnown RBP10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 PPIAP62937 165 aaKnown RBP10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 MPV17LQ2QL34 196 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 PWWP2BQ6NUJ5 590 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 TCEAL8Q8IYN2 117 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 FIZ1Q96SL8 496 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 GNB4Q9HAV0 340 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 TREM2Q9NZC2 230 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 OR6C3Q9NZP0 311 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 CD207Q9UJ71 328 aa10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 ELF5Q9UKW6 265 aaPredicted RBP10.14□□□□□ -0.79
LIMCH1-217ENST00000512946 TMEM189-UBE2V1I3L0A0 370 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 GEMIN2O14893 280 aaKnown RBP10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 GPR37O15354 613 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 SLCO2B1O94956 709 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 LIPFP07098 398 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 SLC6A12P48065 614 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 TMEM267Q0VDI3 215 aaPredicted RBP10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 JOSD1Q15040 202 aaPredicted RBP10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 PARM1Q6UWI2 310 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 HTR3DQ70Z44 454 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 RAB37Q96AX2 223 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 GPR84Q9NQS5 396 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 MYO10Q9HD67 2058 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 RAB29O14966 203 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 ELNP15502 786 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 ATF1P18846 271 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms