RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 LPAR3Q9UBY5 353 aa8.04□□□□□ -1.12
VCAN-208ENST00000512590 CACNA1FO60840 1977 aa8.04□□□□□ -1.12
VCAN-208ENST00000512590 RIMBP3CA6NJZ7 1639 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 RIMBP3BA6NNM3 1639 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 A0A1B0GU03 582 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 TCRBV7S3A2A0A539 114 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 TGFAP01135 160 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 ADRA2AP08913 450 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 SELENOWP63302 87 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 SPANXN1Q5VSR9 72 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 ADGRE4PQ86SQ3 457 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 OR10A7Q8NGE5 316 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 NEU1Q99519 415 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 NRIP3Q9NQ35 241 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 FAM221AA4D161 298 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 ACOD1A6NK06 481 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 CXorf49A8MYA2 514 aaPredicted RBP8.03□□□□□ -1.12
VCAN-208ENST00000512590 E9PQ18 207 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 TMPRSS11DO60235 418 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 OR2C1O95371 312 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 UNGP13051 313 aaPredicted RBP8.03□□□□□ -1.12
VCAN-208ENST00000512590 RPS27AP62979 156 aaKnown RBP8.03□□□□□ -1.12
VCAN-208ENST00000512590 UBA52P62987 128 aaKnown RBP8.03□□□□□ -1.12
VCAN-208ENST00000512590 RNASEKQ6P5S7 137 aaKnown RBP8.03□□□□□ -1.12
VCAN-208ENST00000512590 LRRC56Q8IYG6 542 aaPredicted RBP8.03□□□□□ -1.12
VCAN-208ENST00000512590 COPS9Q8WXC6 57 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 MBNL1Q9NR56 388 aaKnown RBP8.03□□□□□ -1.12
VCAN-208ENST00000512590 CEP152O94986 1710 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 A0A0U1RQS6 177 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 MEX3AA1L020 520 aaKnown RBP8.03□□□□□ -1.12
VCAN-208ENST00000512590 C19orf67A6NJJ6 358 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 SSTR2P30874 369 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 G6PCP35575 357 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 GFERP55789 205 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 GNG3P63215 75 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 CYHR1Q6ZMK1 362 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 WDR88Q6ZMY6 472 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 SLC51BQ86UW2 128 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 GPR55Q9Y2T6 319 aaPredicted RBP8.03□□□□□ -1.12
VCAN-208ENST00000512590 HDGFL3Q9Y3E1 203 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 FLVCR1Q9Y5Y0 555 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 IGHV3-43A0A0B4J1X8 118 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 OR2F2O95006 317 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 IGHV3-43DP0DP04 118 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 ZNF137PP52743 207 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 ZFP62Q8NB50 900 aaPredicted RBP8.03□□□□□ -1.12
VCAN-208ENST00000512590 SLC38A9Q8NBW4 561 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 DUS3LQ96G46 650 aaKnown RBP8.03□□□□□ -1.12
VCAN-208ENST00000512590 SEC22CQ9BRL7 303 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 HCSTQ9UBK5 93 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 DIP2CQ9Y2E4 1556 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 MYO3AQ8NEV4 1616 aa8.03□□□□□ -1.12
VCAN-208ENST00000512590 A0A1B0GWA3 101 aa8.02□□□□□ -1.12
VCAN-208ENST00000512590 LMO7DNF2Z398 122 aa8.02□□□□□ -1.12
VCAN-208ENST00000512590 G3V3Q6 166 aa8.02□□□□□ -1.12
VCAN-208ENST00000512590 FOXH1O75593 365 aa8.02□□□□□ -1.12
VCAN-208ENST00000512590 ZNF205O95201 554 aa8.02□□□□□ -1.12
VCAN-208ENST00000512590 ATP1B1P05026 303 aa8.02□□□□□ -1.12
VCAN-208ENST00000512590 TECRLQ5HYJ1 363 aa8.02□□□□□ -1.12
VCAN-208ENST00000512590 EPGNQ6UW88 154 aa8.02□□□□□ -1.12
VCAN-208ENST00000512590 TMEM182Q6ZP80 229 aaPredicted RBP8.02□□□□□ -1.12
VCAN-208ENST00000512590 GDF7Q7Z4P5 450 aa8.02□□□□□ -1.12
VCAN-208ENST00000512590 LRRTM1Q86UE6 522 aa8.02□□□□□ -1.12
VCAN-208ENST00000512590 C1orf174Q8IYL3 243 aa8.02□□□□□ -1.12
VCAN-208ENST00000512590 NECAP1Q8NC96 275 aa8.02□□□□□ -1.12
VCAN-208ENST00000512590 KHSRPQ92945 711 aaKnown RBP eCLIP8.02□□□□□ -1.12
VCAN-208ENST00000512590 WDR89Q96FK6 387 aaPredicted RBP8.02□□□□□ -1.12
VCAN-208ENST00000512590 FGFBP2Q9BYJ0 223 aa8.02□□□□□ -1.12
VCAN-208ENST00000512590 SLC25A19Q9HC21 320 aa8.02□□□□□ -1.12
VCAN-208ENST00000512590 TMEM189-UBE2V1I3L0A0 370 aa8.02□□□□□ -1.13
VCAN-208ENST00000512590 GYPAP02724 150 aa8.02□□□□□ -1.13
VCAN-208ENST00000512590 ACHEP22303 614 aa8.02□□□□□ -1.13
VCAN-208ENST00000512590 RFX2P48378 723 aa8.02□□□□□ -1.13
VCAN-208ENST00000512590 SULT1A2P50226 295 aa8.02□□□□□ -1.13
VCAN-208ENST00000512590 FUT6P51993 359 aa8.02□□□□□ -1.13
VCAN-208ENST00000512590 SNRPD3P62318 126 aaKnown RBP8.02□□□□□ -1.13
VCAN-208ENST00000512590 SRSF9Q13242 221 aaKnown RBP eCLIP8.02□□□□□ -1.13
VCAN-208ENST00000512590 HMGN3Q15651 99 aa8.02□□□□□ -1.13
VCAN-208ENST00000512590 SYPL1Q16563 259 aa8.02□□□□□ -1.13
VCAN-208ENST00000512590 GUK1Q16774 197 aa8.02□□□□□ -1.13
VCAN-208ENST00000512590 RNF212Q495C1 297 aa8.02□□□□□ -1.13
VCAN-208ENST00000512590 SPINK14Q6IE38 97 aa8.02□□□□□ -1.13
VCAN-208ENST00000512590 NAT8LQ8N9F0 302 aa8.02□□□□□ -1.13
VCAN-208ENST00000512590 ZNF511Q8NB15 262 aa8.02□□□□□ -1.13
VCAN-208ENST00000512590 OR52N4Q8NGI2 321 aa8.02□□□□□ -1.13
VCAN-208ENST00000512590 PATE1Q8WXA2 126 aa8.02□□□□□ -1.13
VCAN-208ENST00000512590 PTX4Q96A99 478 aa8.02□□□□□ -1.13
VCAN-208ENST00000512590 SIGLEC10Q96LC7 697 aa8.02□□□□□ -1.13
VCAN-208ENST00000512590 ZNF2Q9BSG1 426 aaPredicted RBP8.02□□□□□ -1.13
VCAN-208ENST00000512590 LAT2Q9GZY6 243 aa8.02□□□□□ -1.13
VCAN-208ENST00000512590 ZFP64Q9NPA5 681 aa8.02□□□□□ -1.13
VCAN-208ENST00000512590 LHX9Q9NQ69 397 aa8.02□□□□□ -1.13
VCAN-208ENST00000512590 EXOSC3Q9NQT5 275 aaKnown RBP8.02□□□□□ -1.13
VCAN-208ENST00000512590 WBP1LQ9NX94 342 aa8.02□□□□□ -1.13
VCAN-208ENST00000512590 SOX21Q9Y651 276 aaPredicted RBP8.02□□□□□ -1.13
VCAN-208ENST00000512590 ALG1L2C9J202 215 aa8.02□□□□□ -1.13
VCAN-208ENST00000512590 PDGFBP01127 241 aaPredicted RBP8.02□□□□□ -1.13
VCAN-208ENST00000512590 CTSLP07711 333 aa8.02□□□□□ -1.13
VCAN-208ENST00000512590 CEACAM6P40199 344 aa8.02□□□□□ -1.13
VCAN-208ENST00000512590 GPNMBQ14956 572 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms