RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 TMEM236Q5W0B7 351 aa2.25□□□□□ -2.05
HMGB1P28-201ENST00000507778 LRRC52Q8N7C0 313 aa2.25□□□□□ -2.05
HMGB1P28-201ENST00000507778 TMEM105Q8N8V8 129 aa2.25□□□□□ -2.05
HMGB1P28-201ENST00000507778 SPANXA2-OT1Q8N9U9 137 aa2.25□□□□□ -2.05
HMGB1P28-201ENST00000507778 FBXO36Q8NEA4 188 aa2.25□□□□□ -2.05
HMGB1P28-201ENST00000507778 OR1S1Q8NH92 325 aa2.25□□□□□ -2.05
HMGB1P28-201ENST00000507778 RXFP2Q8WXD0 754 aa2.25□□□□□ -2.05
HMGB1P28-201ENST00000507778 OR8D1Q8WZ84 308 aa2.25□□□□□ -2.05
HMGB1P28-201ENST00000507778 FAM19A4Q96LR4 140 aa2.25□□□□□ -2.05
HMGB1P28-201ENST00000507778 LCE3DQ9BYE3 92 aa2.25□□□□□ -2.05
HMGB1P28-201ENST00000507778 ULBP2Q9BZM5 246 aa2.25□□□□□ -2.05
HMGB1P28-201ENST00000507778 FBXO44Q9H4M3 255 aa2.25□□□□□ -2.05
HMGB1P28-201ENST00000507778 FANCEQ9HB96 536 aa2.25□□□□□ -2.05
HMGB1P28-201ENST00000507778 MARCOQ9UEW3 520 aaPredicted RBP2.25□□□□□ -2.05
HMGB1P28-201ENST00000507778 SIGLEC7Q9Y286 467 aa2.25□□□□□ -2.05
HMGB1P28-201ENST00000507778 A0A1W2PPV4 95 aa2.24□□□□□ -2.05
HMGB1P28-201ENST00000507778 A8MUU9 505 aa2.24□□□□□ -2.05
HMGB1P28-201ENST00000507778 POLR1CO15160 346 aaPredicted RBP2.24□□□□□ -2.05
HMGB1P28-201ENST00000507778 TTC4O95801 387 aa2.24□□□□□ -2.05
HMGB1P28-201ENST00000507778 PTTG1O95997 202 aa2.24□□□□□ -2.05
HMGB1P28-201ENST00000507778 IGLV2-8P01709 118 aa2.24□□□□□ -2.05
HMGB1P28-201ENST00000507778 PRKACBP22694 351 aa2.24□□□□□ -2.05
HMGB1P28-201ENST00000507778 CXCR1P25024 350 aa2.24□□□□□ -2.05
HMGB1P28-201ENST00000507778 INCA1Q0VD86 236 aa2.24□□□□□ -2.05
HMGB1P28-201ENST00000507778 FUT5Q11128 374 aa2.24□□□□□ -2.05
HMGB1P28-201ENST00000507778 HSP90AA4PQ58FG1 418 aa2.24□□□□□ -2.05
HMGB1P28-201ENST00000507778 STEAP4Q687X5 459 aa2.24□□□□□ -2.05
HMGB1P28-201ENST00000507778 SLC35G3Q8N808 338 aa2.24□□□□□ -2.05
HMGB1P28-201ENST00000507778 ST20-AS1Q8NBB2 130 aa2.24□□□□□ -2.05
HMGB1P28-201ENST00000507778 APCDD1LQ8NCL9 501 aa2.24□□□□□ -2.05
HMGB1P28-201ENST00000507778 OR6K6Q8NGW6 343 aa2.24□□□□□ -2.05
HMGB1P28-201ENST00000507778 BAALCQ8WXS3 180 aa2.24□□□□□ -2.05
HMGB1P28-201ENST00000507778 TMEM159Q96B96 161 aa2.24□□□□□ -2.05
HMGB1P28-201ENST00000507778 NAPGQ99747 312 aaPredicted RBP2.24□□□□□ -2.05
HMGB1P28-201ENST00000507778 TMEM175Q9BSA9 504 aa2.24□□□□□ -2.05
HMGB1P28-201ENST00000507778 ZSCAN16Q9H4T2 348 aaPredicted RBP2.24□□□□□ -2.05
HMGB1P28-201ENST00000507778 KIR3DX1Q9H7L2 352 aa2.24□□□□□ -2.05
HMGB1P28-201ENST00000507778 HEBP1Q9NRV9 189 aa2.24□□□□□ -2.05
HMGB1P28-201ENST00000507778 KPTNQ9Y664 436 aa2.24□□□□□ -2.05
HMGB1P28-201ENST00000507778 KIF27Q86VH2 1401 aa2.24□□□□□ -2.05
HMGB1P28-201ENST00000507778 CENPBD1B2RD01 187 aa2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 K7EM74 188 aa2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 LGALS9O00182 355 aa2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 DFFAO00273 331 aa2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 SNAI1O95863 264 aaPredicted RBP2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 GCGP01275 180 aa2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 CRYGCP07315 174 aa2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 SLC35G6P0C7Q6 338 aa2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 HOXB8P17481 243 aaPredicted RBP2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 CELP19835 753 aa2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 IVDP26440 423 aa2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 ERFP50548 548 aa2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 PSMC5P62195 406 aa2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 SLC35A1P78382 337 aa2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 C2orf54Q08AI8 447 aa2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 KRTAP13-2Q52LG2 175 aa2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 KDM4DQ6B0I6 523 aa2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 ZNF101Q8IZC7 436 aa2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 SLC7A5P1Q8MH63 180 aa2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 LYPD1Q8N2G4 141 aa2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 MIR7-3HGQ8N6C7 128 aa2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 LINC00469Q8N7U9 141 aa2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 OR4M2Q8NGB6 313 aa2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 OR51L1Q8NGJ5 315 aa2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 TOP1MTQ969P6 601 aa2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 CPNE4Q96A23 557 aaPredicted RBP2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 SNF8Q96H20 258 aa2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 GPR82Q96P67 336 aa2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 IP6K3Q96PC2 410 aa2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 ALS2CR12Q96Q35 445 aa2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 GABRG3Q99928 467 aa2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 ARV1Q9H2C2 271 aa2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 CSNK1G1Q9HCP0 422 aa2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 LZTFL1Q9NQ48 299 aa2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 NDRG2Q9UN36 371 aaKnown RBP2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 CHTOPQ9Y3Y2 248 aaKnown RBP2.23□□□□□ -2.05
HMGB1P28-201ENST00000507778 COL4A4P53420 1690 aaPredicted RBP2.22□□□□□ -2.05
HMGB1P28-201ENST00000507778 CCL15-CCL14A0A0B4J2E2 113 aa2.22□□□□□ -2.05
HMGB1P28-201ENST00000507778 CCDC22O60826 627 aa2.22□□□□□ -2.05
HMGB1P28-201ENST00000507778 ETHE1O95571 254 aa2.22□□□□□ -2.05
HMGB1P28-201ENST00000507778 OTCP00480 354 aa2.22□□□□□ -2.05
HMGB1P28-201ENST00000507778 IGLV3-19P01714 112 aa2.22□□□□□ -2.05
HMGB1P28-201ENST00000507778 CMC4P56277 68 aaPredicted RBP2.22□□□□□ -2.05
HMGB1P28-201ENST00000507778 MTPNP58546 118 aa2.22□□□□□ -2.05
HMGB1P28-201ENST00000507778 TAS2R43P59537 309 aa2.22□□□□□ -2.05
HMGB1P28-201ENST00000507778 PPP1CAP62136 330 aa2.22□□□□□ -2.05
HMGB1P28-201ENST00000507778 ST3GAL4Q11206 333 aa2.22□□□□□ -2.05
HMGB1P28-201ENST00000507778 CCL15Q16663 113 aa2.22□□□□□ -2.05
HMGB1P28-201ENST00000507778 ATP6V1FQ16864 119 aa2.22□□□□□ -2.05
HMGB1P28-201ENST00000507778 NKAIN1Q4KMZ8 207 aa2.22□□□□□ -2.05
HMGB1P28-201ENST00000507778 PRR9Q5T870 116 aa2.22□□□□□ -2.05
HMGB1P28-201ENST00000507778 THOC7Q6I9Y2 204 aaKnown RBP2.22□□□□□ -2.05
HMGB1P28-201ENST00000507778 ARHGAP18Q8N392 663 aa2.22□□□□□ -2.05
HMGB1P28-201ENST00000507778 TMEM234Q8WY98 164 aa2.22□□□□□ -2.05
HMGB1P28-201ENST00000507778 ING5Q8WYH8 240 aa2.22□□□□□ -2.05
HMGB1P28-201ENST00000507778 TFGQ92734 400 aaPredicted RBP2.22□□□□□ -2.05
HMGB1P28-201ENST00000507778 MRPL48Q96GC5 212 aaKnown RBP2.22□□□□□ -2.05
HMGB1P28-201ENST00000507778 SMARCD1Q96GM5 515 aa2.22□□□□□ -2.05
HMGB1P28-201ENST00000507778 Q96MT0 163 aa2.22□□□□□ -2.05
HMGB1P28-201ENST00000507778 MARVELD1Q9BSK0 173 aa2.22□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms