RNA–Protein interactions for RNA: ENST00000498325.5

HMGXB4-208, Transcript of HMG-box containing 4, human

TSL 3

Gene HMGXB4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGXB4-208	ENST00000498325	DCLRE1C	Q96SD1	692 aa	Known RBP	4.61	□□□□□ -1.67
HMGXB4-208	ENST00000498325	FOXB1	Q99853	325 aa		4.61	□□□□□ -1.67
HMGXB4-208	ENST00000498325	ATF6B	Q99941	703 aa		4.61	□□□□□ -1.67
HMGXB4-208	ENST00000498325	BARHL1	Q9BZE3	327 aa		4.61	□□□□□ -1.67
HMGXB4-208	ENST00000498325	PBOV1	Q9GZY1	135 aa		4.61	□□□□□ -1.67
HMGXB4-208	ENST00000498325	HDHD2	Q9H0R4	259 aa		4.61	□□□□□ -1.67
HMGXB4-208	ENST00000498325	RNF121	Q9H920	327 aa		4.61	□□□□□ -1.67
HMGXB4-208	ENST00000498325	G6PC2	Q9NQR9	355 aa		4.61	□□□□□ -1.67
HMGXB4-208	ENST00000498325	ASF1B	Q9NVP2	202 aa		4.61	□□□□□ -1.67
HMGXB4-208	ENST00000498325	TMEM38B	Q9NVV0	291 aa		4.61	□□□□□ -1.67
HMGXB4-208	ENST00000498325	PLEK2	Q9NYT0	353 aa		4.61	□□□□□ -1.67
HMGXB4-208	ENST00000498325	SPRR3	Q9UBC9	169 aa		4.61	□□□□□ -1.67
HMGXB4-208	ENST00000498325	COMMD3	Q9UBI1	195 aa		4.61	□□□□□ -1.67
HMGXB4-208	ENST00000498325	CKLF	Q9UBR5	152 aa		4.61	□□□□□ -1.67
HMGXB4-208	ENST00000498325	FOXJ3	Q9UPW0	622 aa		4.61	□□□□□ -1.67
HMGXB4-208	ENST00000498325	SLC22A13	Q9Y226	551 aa		4.61	□□□□□ -1.67
HMGXB4-208	ENST00000498325	TIMM10B	Q9Y5J6	103 aa		4.61	□□□□□ -1.67
HMGXB4-208	ENST00000498325	TRBV5-7	A0A0A0MS05	114 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325		A0A1W2PPK0	400 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	SMIM30	A4D0T7	59 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	FABP12	A6NFH5	140 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	ANXA2P2	A6NMY6	339 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	FAM25A	B3EWG3	89 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	FAM25C	B3EWG5	89 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	FAM25G	B3EWG6	89 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	P2RY10	O00398	339 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	RER1	O15258	196 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	PIN1P1	O15428	100 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	SYT7	O43581	403 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	WDR1	O75083	606 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	SS18L1	O75177	396 aa	Predicted RBP	4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	SRSF10	O75494	262 aa	Known RBP	4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	UPK1B	O75841	260 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	NCR1	O76036	304 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	PNP	P00491	289 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	ANXA2	P07355	339 aa	Known RBP	4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	HOXD4	P09016	255 aa	Predicted RBP	4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	TRAPPC2	P0DI81	140 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	TRAPPC2B	P0DI82	140 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	COX6B1	P14854	86 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	AGTR1	P30556	359 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	ARR3	P36575	388 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	TALDO1	P37837	337 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	OR3A2	P47893	321 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	CX3CR1	P49238	355 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	PRKX	P51817	358 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	CAV3	P56539	151 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	ARF1	P84077	181 aa	Known RBP	4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	GALK2	Q01415	458 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	RAB35	Q15286	201 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	C3AR1	Q16581	482 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	ODF4	Q2M2E3	257 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	SLC36A2	Q495M3	483 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	FAM27D1	Q5T7N8	215 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	LCE1A	Q5T7P2	110 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	SFXN4	Q6P4A7	337 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	FAM180A	Q6UWF9	173 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	STAC2	Q6ZMT1	411 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	CFAP77	Q6ZQR2	320 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	DOK3	Q7L591	496 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	NUFIP2	Q7Z417	695 aa	Known RBP	4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	FGD2	Q7Z6J4	655 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	CCDC190	Q86UF4	302 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	SIAH3	Q8IW03	269 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	SERPINA12	Q8IW75	414 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	CCDC36	Q8IYA8	594 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	RDH10	Q8IZV5	341 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	PARP16	Q8N5Y8	322 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	ZNF433	Q8N7K0	673 aa	Predicted RBP	4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	RBMXL3	Q8N7X1	1067 aa	Known RBP	4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	IL17RD	Q8NFM7	739 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	OR10S1	Q8NGN2	331 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	OR13C3	Q8NGS6	347 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	ASB5	Q8WWX0	329 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	RGP1	Q92546	391 aa	Predicted RBP	4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	TMEM106A	Q96A25	262 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	FOXRED1	Q96CU9	486 aa	Predicted RBP	4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	FBXO17	Q96EF6	278 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	ALKBH3	Q96Q83	286 aa	Predicted RBP	4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	SLC30A2	Q9BRI3	323 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	CCDC32	Q9BV29	185 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	PPIL3	Q9H2H8	161 aa	Known RBP	4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	ABCB9	Q9NP78	766 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	SLC7A10	Q9NS82	523 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	DDX28	Q9NUL7	540 aa	Known RBP	4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	FAM206A	Q9NX38	181 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	RABL2A	Q9UBK7	228 aa	Predicted RBP	4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	NUFIP1	Q9UHK0	495 aa	Known RBP	4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	FBXL3	Q9UKT7	428 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	CLEC4A	Q9UMR7	237 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	RABL2B	Q9UNT1	228 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	AK6	Q9Y3D8	172 aa	Known RBP	4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325		V9GY05	133 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325	COL6A5	A8TX70	2615 aa		4.6	□□□□□ -1.67
HMGXB4-208	ENST00000498325		A0A0U1RQV5	110 aa		4.59	□□□□□ -1.67
HMGXB4-208	ENST00000498325	LOC107986453	A0A1B0GWG9	222 aa		4.59	□□□□□ -1.67
HMGXB4-208	ENST00000498325	OR6C6	A6NF89	314 aa		4.59	□□□□□ -1.67
HMGXB4-208	ENST00000498325		F5H5K5	113 aa		4.59	□□□□□ -1.67
HMGXB4-208	ENST00000498325		M0R135	149 aa		4.59	□□□□□ -1.67
HMGXB4-208	ENST00000498325	DVL2	O14641	736 aa		4.59	□□□□□ -1.67

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