RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 ZNF735P0CB33 412 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 SLC35E2P0CK97 266 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 RNH1P13489 461 aaKnown RBP3.12□□□□□ -1.91
PTCD3-216ENST00000487043 CPMP14384 443 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 TCN1P20061 433 aaPredicted RBP3.12□□□□□ -1.91
PTCD3-216ENST00000487043 HTR1EP28566 365 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 NTSP30990 170 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 XKP51811 444 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 NCBP2P52298 156 aaKnown RBP eCLIP3.12□□□□□ -1.91
PTCD3-216ENST00000487043 MTPNP58546 118 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 IGLV3-21P80748 117 aaPredicted RBP3.12□□□□□ -1.91
PTCD3-216ENST00000487043 PAX2Q02962 417 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 BNIP2Q12982 314 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 FADDQ13158 208 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 DYNC1I2Q13409 638 aaKnown RBP3.12□□□□□ -1.91
PTCD3-216ENST00000487043 SERTAD2Q14140 314 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 C16orf72Q14CZ0 275 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 RGNQ15493 299 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 KIF26BQ2KJY2 2108 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 ISXQ2M1V0 245 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 MRGPRG-AS1Q2M3A8 158 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 DMRTC1Q5HYR2 192 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 PRAMEF5Q5TYX0 476 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 C1orf146Q5VVC0 180 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 PRAMEF6Q5VXH4 476 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 GLYATQ6IB77 296 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 OR52E8Q6IFG1 317 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 ZNF600Q6ZNG1 722 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 C6orf120Q7Z4R8 191 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 CALHM3Q86XJ0 350 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 OR9K2Q8NGE7 335 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 OR52E4Q8NGH9 312 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 OR51Q1Q8NH59 317 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 OR10A6Q8NH74 314 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 RASL10AQ92737 203 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 POP5Q969H6 163 aaKnown RBP3.12□□□□□ -1.91
PTCD3-216ENST00000487043 ANKRD9Q96BM1 317 aaPredicted RBP3.12□□□□□ -1.91
PTCD3-216ENST00000487043 NEURL3Q96EH8 262 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 DUS3LQ96G46 650 aaKnown RBP3.12□□□□□ -1.91
PTCD3-216ENST00000487043 TIMD4Q96H15 378 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 CITED1Q99966 193 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 RBM4BQ9BQ04 359 aaKnown RBP3.12□□□□□ -1.91
PTCD3-216ENST00000487043 SLC35A5Q9BS91 424 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 NIPSNAP3BQ9BS92 247 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 GPR61Q9BZJ8 451 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 SYNDIG1Q9H7V2 258 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 PRTFDC1Q9NRG1 225 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 DHCR7Q9UBM7 475 aaKnown RBP3.12□□□□□ -1.91
PTCD3-216ENST00000487043 SAMD4AQ9UPU9 718 aaKnown RBP3.12□□□□□ -1.91
PTCD3-216ENST00000487043 IFT52Q9Y366 437 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 USP34Q70CQ2 3546 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 WDR87Q6ZQQ6 2873 aa3.12□□□□□ -1.91
PTCD3-216ENST00000487043 NUP214P35658 2090 aaPredicted RBP3.12□□□□□ -1.91
PTCD3-216ENST00000487043 LAMA1P25391 3075 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 ASCC3Q8N3C0 2202 aaKnown RBP3.11□□□□□ -1.91
PTCD3-216ENST00000487043 IGLV3-12A0A075B6K2 115 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 A0A1W2PPR1 153 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 TCRBV3S1A0A5B6 114 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 VSTM2BA6NLU5 285 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 FAM220BPB1ANY3 271 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 UPK1AO00322 258 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 POLR1CO15160 346 aaPredicted RBP3.11□□□□□ -1.91
PTCD3-216ENST00000487043 EMC8O43402 210 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 GPX5O75715 221 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 ATP5LO75964 103 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 GAS8-AS1O95177 125 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 PSMG1O95456 288 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 STAMBPO95630 424 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 C1QCP02747 245 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 TFPTP0C1Z6 253 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 CCL4P13236 92 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 GGT1P19440 569 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 CSRP1P21291 193 aaKnown RBP3.11□□□□□ -1.91
PTCD3-216ENST00000487043 IGHV1-2P23083 117 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 FGF9P31371 208 aaPredicted RBP3.11□□□□□ -1.91
PTCD3-216ENST00000487043 IL2RGP31785 369 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 CD80P33681 288 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 KDELR2P33947 212 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 RORAP35398 523 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 CRATP43155 626 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 XCR1P46094 333 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 HLCSP50747 726 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 CDK9P50750 372 aaKnown RBP3.11□□□□□ -1.91
PTCD3-216ENST00000487043 OR4D2P58180 307 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 BTG2P78543 158 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 DCDP81605 110 aaKnown RBP3.11□□□□□ -1.91
PTCD3-216ENST00000487043 STX4Q12846 297 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 EIF3IQ13347 325 aaKnown RBP3.11□□□□□ -1.91
PTCD3-216ENST00000487043 FLOT2Q14254 428 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 SSX2Q16385 188 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 ZNF630Q2M218 657 aaPredicted RBP3.11□□□□□ -1.91
PTCD3-216ENST00000487043 NKAIN1Q4KMZ8 207 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 FHL5Q5TD97 284 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 SAXO2Q658L1 398 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 LCN8Q6JVE9 175 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 UFSP1Q6NVU6 142 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 ERICH5Q6P6B1 374 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 DHFR2Q86XF0 187 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 C9orf40Q8IXQ3 194 aa3.11□□□□□ -1.91
PTCD3-216ENST00000487043 MICU2Q8IYU8 434 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms