RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 PPIHO43447 177 aaKnown RBP11.76□□□□□ -0.53
USP40-214ENST00000483519 IFNA2P01563 188 aa11.76□□□□□ -0.53
USP40-214ENST00000483519 HNRNPA2B1P22626 353 aaKnown RBP11.76□□□□□ -0.53
USP40-214ENST00000483519 GLRA1P23415 457 aa11.76□□□□□ -0.53
USP40-214ENST00000483519 UCP2P55851 309 aa11.76□□□□□ -0.53
USP40-214ENST00000483519 PARM1Q6UWI2 310 aa11.76□□□□□ -0.53
USP40-214ENST00000483519 ZNF565Q8N9K5 539 aa11.76□□□□□ -0.53
USP40-214ENST00000483519 FNDC9Q8TBE3 224 aa11.76□□□□□ -0.53
USP40-214ENST00000483519 PRRX2Q99811 253 aa11.76□□□□□ -0.53
USP40-214ENST00000483519 URM1Q9BTM9 101 aaKnown RBP11.76□□□□□ -0.53
USP40-214ENST00000483519 GGACTQ9BVM4 153 aa11.76□□□□□ -0.53
USP40-214ENST00000483519 TBL1XR1Q9BZK7 514 aa11.76□□□□□ -0.53
USP40-214ENST00000483519 TMEM131Q92545 1883 aa11.76□□□□□ -0.53
USP40-214ENST00000483519 NPIPA5E9PKD4 350 aa11.76□□□□□ -0.53
USP40-214ENST00000483519 DAOP14920 347 aa11.76□□□□□ -0.53
USP40-214ENST00000483519 KIR2DL1P43626 348 aaPredicted RBP11.76□□□□□ -0.53
USP40-214ENST00000483519 HTR5AP47898 357 aa11.76□□□□□ -0.53
USP40-214ENST00000483519 DAP3P51398 398 aaKnown RBP11.76□□□□□ -0.53
USP40-214ENST00000483519 FMODQ06828 376 aa11.76□□□□□ -0.53
USP40-214ENST00000483519 OR2B11Q5JQS5 317 aa11.76□□□□□ -0.53
USP40-214ENST00000483519 ZNF321PQ8N8H1 164 aa11.76□□□□□ -0.53
USP40-214ENST00000483519 TMEM104Q8NE00 496 aa11.76□□□□□ -0.53
USP40-214ENST00000483519 GAL3ST4Q96RP7 486 aa11.76□□□□□ -0.53
USP40-214ENST00000483519 PBDC1Q9BVG4 233 aa11.76□□□□□ -0.53
USP40-214ENST00000483519 RAB33BQ9H082 229 aa11.76□□□□□ -0.53
USP40-214ENST00000483519 PLEKHA2Q9HB19 425 aa11.76□□□□□ -0.53
USP40-214ENST00000483519 PNO1Q9NRX1 252 aaKnown RBP11.76□□□□□ -0.53
USP40-214ENST00000483519 EHFQ9NZC4 300 aa11.76□□□□□ -0.53
USP40-214ENST00000483519 NPIPA1Q9UND3 350 aa11.76□□□□□ -0.53
USP40-214ENST00000483519 A0A1W2PQD3 144 aa11.75□□□□□ -0.53
USP40-214ENST00000483519 NME2P1O60361 137 aa11.75□□□□□ -0.53
USP40-214ENST00000483519 SEC11BP0C7V7 166 aa11.75□□□□□ -0.53
USP40-214ENST00000483519 DANCRP0C864 163 aa11.75□□□□□ -0.53
USP40-214ENST00000483519 THBS4P35443 961 aa11.75□□□□□ -0.53
USP40-214ENST00000483519 CSNK2A1P68400 391 aaPredicted RBP11.75□□□□□ -0.53
USP40-214ENST00000483519 CSNK2A3Q8NEV1 391 aa11.75□□□□□ -0.53
USP40-214ENST00000483519 OR10H5Q8NGA6 315 aa11.75□□□□□ -0.53
USP40-214ENST00000483519 PTPMT1Q8WUK0 201 aaPredicted RBP11.75□□□□□ -0.53
USP40-214ENST00000483519 SLAMF6Q96DU3 332 aa11.75□□□□□ -0.53
USP40-214ENST00000483519 SMIM3Q9BZL3 60 aa11.75□□□□□ -0.53
USP40-214ENST00000483519 OR8D2Q9GZM6 311 aa11.75□□□□□ -0.53
USP40-214ENST00000483519 OPA3Q9H6K4 179 aa11.75□□□□□ -0.53
USP40-214ENST00000483519 KCNJ16Q9NPI9 418 aa11.75□□□□□ -0.53
USP40-214ENST00000483519 SUSD2Q9UGT4 822 aa11.75□□□□□ -0.53
USP40-214ENST00000483519 TUBD1Q9UJT1 453 aa11.75□□□□□ -0.53
USP40-214ENST00000483519 BORCS7-ASMTA0A0B4J1R7 106 aa11.75□□□□□ -0.53
USP40-214ENST00000483519 ALG1L2C9J202 215 aa11.75□□□□□ -0.53
USP40-214ENST00000483519 ZNF354AO60765 605 aaPredicted RBP11.75□□□□□ -0.53
USP40-214ENST00000483519 RAD51DO75771 328 aa11.75□□□□□ -0.53
USP40-214ENST00000483519 IFNA21P01568 189 aa11.75□□□□□ -0.53
USP40-214ENST00000483519 NTSR1P30989 418 aa11.75□□□□□ -0.53
USP40-214ENST00000483519 MAS1LP35410 378 aa11.75□□□□□ -0.53
USP40-214ENST00000483519 CAMLGP49069 296 aa11.75□□□□□ -0.53
USP40-214ENST00000483519 SPEM2Q0P670 501 aa11.75□□□□□ -0.53
USP40-214ENST00000483519 TDGQ13569 410 aa11.75□□□□□ -0.53
USP40-214ENST00000483519 GRINAQ7Z429 371 aa11.75□□□□□ -0.53
USP40-214ENST00000483519 METTL27Q8N6F8 245 aaPredicted RBP11.75□□□□□ -0.53
USP40-214ENST00000483519 ASB10Q8WXI3 467 aa11.75□□□□□ -0.53
USP40-214ENST00000483519 ARHGAP5-AS1Q96IT6 56 aa11.75□□□□□ -0.53
USP40-214ENST00000483519 PFDN5Q99471 154 aa11.75□□□□□ -0.53
USP40-214ENST00000483519 FOXQ1Q9C009 403 aa11.75□□□□□ -0.53
USP40-214ENST00000483519 CUTCQ9NTM9 273 aa11.75□□□□□ -0.53
USP40-214ENST00000483519 TREM2Q9NZC2 230 aa11.75□□□□□ -0.53
USP40-214ENST00000483519 AMDHD2Q9Y303 409 aa11.75□□□□□ -0.53
USP40-214ENST00000483519 KNG1P01042 644 aa11.74□□□□□ -0.53
USP40-214ENST00000483519 ARG1P05089 322 aa11.74□□□□□ -0.53
USP40-214ENST00000483519 HLA-DOBP13765 273 aa11.74□□□□□ -0.53
USP40-214ENST00000483519 BCKDHBP21953 392 aa11.74□□□□□ -0.53
USP40-214ENST00000483519 ECI1P42126 302 aa11.74□□□□□ -0.53
USP40-214ENST00000483519 SNU13P55769 128 aaKnown RBP11.74□□□□□ -0.53
USP40-214ENST00000483519 TMEM196Q5HYL7 178 aa11.74□□□□□ -0.53
USP40-214ENST00000483519 NCMAPQ5T1S8 102 aa11.74□□□□□ -0.53
USP40-214ENST00000483519 SFTPA2Q8IWL1 248 aa11.74□□□□□ -0.53
USP40-214ENST00000483519 CD300LFQ8TDQ1 290 aa11.74□□□□□ -0.53
USP40-214ENST00000483519 FGF14Q92915 247 aa11.74□□□□□ -0.53
USP40-214ENST00000483519 ST6GALNAC5Q9BVH7 336 aa11.74□□□□□ -0.53
USP40-214ENST00000483519 PARP12Q9H0J9 701 aaKnown RBP11.74□□□□□ -0.53
USP40-214ENST00000483519 SLC35B3Q9H1N7 401 aa11.74□□□□□ -0.53
USP40-214ENST00000483519 BANF2Q9H503 90 aa11.74□□□□□ -0.53
USP40-214ENST00000483519 MOB1AQ9H8S9 216 aa11.74□□□□□ -0.53
USP40-214ENST00000483519 A0A1W2PPE2 198 aa11.74□□□□□ -0.53
USP40-214ENST00000483519 RHPN2P1A8MT19 583 aa11.74□□□□□ -0.53
USP40-214ENST00000483519 SDCBPO00560 298 aaPredicted RBP11.74□□□□□ -0.53
USP40-214ENST00000483519 NDUFS6O75380 124 aaKnown RBP11.74□□□□□ -0.53
USP40-214ENST00000483519 CRTAPO75718 401 aaPredicted RBP11.74□□□□□ -0.53
USP40-214ENST00000483519 TNFP01375 233 aa11.74□□□□□ -0.53
USP40-214ENST00000483519 OR3A4PP47883 348 aa11.74□□□□□ -0.53
USP40-214ENST00000483519 SUCLG1P53597 346 aaKnown RBP11.74□□□□□ -0.53
USP40-214ENST00000483519 TMEM50BP56557 158 aa11.74□□□□□ -0.53
USP40-214ENST00000483519 YPEL5P62699 121 aa11.74□□□□□ -0.53
USP40-214ENST00000483519 GPBAR1Q8TDU6 330 aa11.74□□□□□ -0.53
USP40-214ENST00000483519 C1orf147Q96MC9 270 aaPredicted RBP11.74□□□□□ -0.53
USP40-214ENST00000483519 SPACA5Q96QH8 159 aa11.74□□□□□ -0.53
USP40-214ENST00000483519 MESP1Q9BRJ9 268 aa11.74□□□□□ -0.53
USP40-214ENST00000483519 SCRT1Q9BWW7 348 aa11.74□□□□□ -0.53
USP40-214ENST00000483519 OR11A1Q9GZK7 315 aa11.74□□□□□ -0.53
USP40-214ENST00000483519 ARV1Q9H2C2 271 aa11.74□□□□□ -0.53
USP40-214ENST00000483519 STRAPQ9Y3F4 350 aaKnown RBP11.74□□□□□ -0.53
USP40-214ENST00000483519 C17orf51A8MQB3 221 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 VSTM5A8MXK1 200 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms