RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 SEMA7AO75326 666 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 GPR32P1Q8NGA4 272 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 OR52L2PQ8NGH6 319 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 TXNDC17Q9BRA2 123 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 TMEM167BQ9NRX6 74 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 RD3LP0DJH9 198 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 THBS4P35443 961 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 TRILQ7L0X0 811 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 NECAP1Q8NC96 275 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 HIST1H1BP16401 226 aaKnown RBP12.06□□□□□ -0.48
COL6A3-209ENST00000472056 CD22P20273 847 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 FOXB2Q5VYV0 432 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 FDX2Q6P4F2 183 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 PRRX2Q99811 253 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 HAPLN2Q9GZV7 340 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 IL23AQ9NPF7 189 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 USP22Q9UPT9 525 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 NCOR1O75376 2440 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 PCNX1Q96RV3 2341 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 PKDREJQ9NTG1 2253 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 GSTZ1O43708 216 aaPredicted RBP12.06□□□□□ -0.48
COL6A3-209ENST00000472056 CD38P28907 300 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 ARRDC3Q96B67 414 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 VCX2Q9H322 139 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 HS3ST3A1Q9Y663 406 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 A0A1B0GX78 115 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 TAPBPO15533 448 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 CD3DP04234 171 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.06□□□□□ -0.48
COL6A3-209ENST00000472056 UQCC1Q9NVA1 299 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 ISLRO14498 428 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 HCRTO43612 131 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 BSGP35613 385 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 HOXC5Q00444 222 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 PABPC1L2AQ5JQF8 200 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 SEBOXQ9HB31 216 aaPredicted RBP12.06□□□□□ -0.48
COL6A3-209ENST00000472056 HSPB6O14558 160 aa12.05□□□□□ -0.48
COL6A3-209ENST00000472056 CCL5P13501 91 aa12.05□□□□□ -0.48
COL6A3-209ENST00000472056 GSG1Q2KHT4 349 aa12.05□□□□□ -0.48
COL6A3-209ENST00000472056 SDF2Q99470 211 aa12.05□□□□□ -0.48
COL6A3-209ENST00000472056 MFNGO00587 321 aa12.05□□□□□ -0.48
COL6A3-209ENST00000472056 DHRS2Q13268 280 aa12.05□□□□□ -0.48
COL6A3-209ENST00000472056 CLN3Q13286 438 aa12.05□□□□□ -0.48
COL6A3-209ENST00000472056 Q6ZPB1 254 aaPredicted RBP12.05□□□□□ -0.48
COL6A3-209ENST00000472056 MARVELD3Q96A59 401 aa12.05□□□□□ -0.48
COL6A3-209ENST00000472056 PACRGQ96M98 296 aaPredicted RBP12.05□□□□□ -0.48
COL6A3-209ENST00000472056 SDK2Q58EX2 2172 aa12.05□□□□□ -0.48
COL6A3-209ENST00000472056 PLPP1O14494 284 aa12.05□□□□□ -0.48
COL6A3-209ENST00000472056 G6PCP35575 357 aa12.05□□□□□ -0.48
COL6A3-209ENST00000472056 CD96P40200 585 aa12.05□□□□□ -0.48
COL6A3-209ENST00000472056 PTGFRP43088 359 aa12.05□□□□□ -0.48
COL6A3-209ENST00000472056 PRR27Q6MZM9 219 aa12.05□□□□□ -0.48
COL6A3-209ENST00000472056 JMJD6Q6NYC1 403 aaPredicted RBP12.05□□□□□ -0.48
COL6A3-209ENST00000472056 PRSS45Q7RTY3 260 aa12.05□□□□□ -0.48
COL6A3-209ENST00000472056 OR1L4Q8NGR5 311 aa12.05□□□□□ -0.48
COL6A3-209ENST00000472056 OR52N5Q8NH56 324 aa12.05□□□□□ -0.48
COL6A3-209ENST00000472056 MMP24Q9Y5R2 645 aa12.05□□□□□ -0.48
COL6A3-209ENST00000472056 AFMIDQ63HM1 303 aa12.05□□□□□ -0.48
COL6A3-209ENST00000472056 CALHM3Q86XJ0 350 aa12.05□□□□□ -0.48
COL6A3-209ENST00000472056 ZDHHC23Q8IYP9 409 aa12.05□□□□□ -0.48
COL6A3-209ENST00000472056 STXBP6Q8NFX7 210 aa12.05□□□□□ -0.48
COL6A3-209ENST00000472056 DNAJA3Q96EY1 480 aa12.05□□□□□ -0.48
COL6A3-209ENST00000472056 WFIKKN1Q96NZ8 548 aa12.05□□□□□ -0.48
COL6A3-209ENST00000472056 GFYI3L273 518 aa12.05□□□□□ -0.48
COL6A3-209ENST00000472056 ZBTB25P24278 435 aa12.05□□□□□ -0.48
COL6A3-209ENST00000472056 OR5D18Q8NGL1 313 aa12.05□□□□□ -0.48
COL6A3-209ENST00000472056 OR5D13Q8NGL4 314 aa12.05□□□□□ -0.48
COL6A3-209ENST00000472056 TIMM9Q9Y5J7 89 aa12.05□□□□□ -0.48
COL6A3-209ENST00000472056 PIAS3Q9Y6X2 628 aa12.05□□□□□ -0.48
COL6A3-209ENST00000472056 ZNF542PQ5EBM4 170 aa12.05□□□□□ -0.48
COL6A3-209ENST00000472056 PARS2Q7L3T8 475 aaKnown RBP12.05□□□□□ -0.48
COL6A3-209ENST00000472056 OR51H1Q8NH63 302 aa12.05□□□□□ -0.48
COL6A3-209ENST00000472056 PELI1Q96FA3 418 aa12.05□□□□□ -0.48
COL6A3-209ENST00000472056 SMAD6O43541 496 aaKnown RBP12.04□□□□□ -0.48
COL6A3-209ENST00000472056 OR2J3O76001 311 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 NPPBP16860 134 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 HOXD9P28356 352 aaPredicted RBP12.04□□□□□ -0.48
COL6A3-209ENST00000472056 ZNF813Q6ZN06 617 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 BVESQ8NE79 360 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 OR1L1Q8NH94 360 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 HINT3Q9NQE9 182 aaKnown RBP12.04□□□□□ -0.48
COL6A3-209ENST00000472056 MAP1LC3B2A6NCE7 125 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 PRSS56P0CW18 603 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 CRISP2P16562 243 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 IL24Q13007 206 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 MAP1LC3BQ9GZQ8 125 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 TMEM9BQ9NQ34 198 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 LRIT1Q9P2V4 623 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 A0A1W2PN81 502 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 RBFOX3A6NFN3 312 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 CHRNA7P36544 502 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 ZNF766Q5HY98 468 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 OSR2Q8N2R0 312 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 MORN4Q8NDC4 146 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 NTNG1Q9Y2I2 539 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 PSME4Q14997 1843 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 MPC2O95563 127 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 GCGP01275 180 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 ADGRG7Q96K78 797 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 OXGR1Q96P68 337 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms