RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 HS3ST1O14792 307 aa12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 GTF3C1Q12789 2109 aa12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 LTC4SQ16873 150 aa12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 CCDC107Q8WV48 283 aa12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 LIPHQ8WWY8 451 aa12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 RALYQ9UKM9 306 aaKnown RBP12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 MCTS1Q9ULC4 181 aaKnown RBP12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 TRBV5-7A0A0A0MS05 114 aa12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 MED19A0JLT2 244 aaPredicted RBP12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 LYZL6O75951 148 aa12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 NTF4P34130 210 aa12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 ZP1P60852 638 aa12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 BTG1P62324 171 aa12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 PPP1R1AQ13522 171 aa12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 LGALSLQ3ZCW2 172 aaPredicted RBP12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 ZNF611Q8N823 705 aa12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 SUMF1Q8NBK3 374 aa12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 CHRNA10Q9GZZ6 450 aa12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 TAS2R8Q9NYW2 309 aa12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 RAB22AQ9UL26 194 aa12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 YKT6O15498 198 aa12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 GLRA1P23415 457 aa12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 DLX5P56178 289 aa12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 UNC119Q13432 240 aa12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 DYRK1AQ13627 763 aa12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 EXOSC2Q13868 293 aaKnown RBP12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 PIGYQ3MUY2 71 aa12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 CD276Q5ZPR3 534 aa12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 FBXL14Q8N1E6 418 aa12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 ZNF680Q8NEM1 530 aa12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 OR14J1Q9UGF5 321 aa12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 A0A0A6YYH2 397 aa12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 A6NJ64 397 aa12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 GJE1A6NN92 205 aa12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 ICMTO60725 284 aa12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 MEOX1P50221 254 aa12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 PLP2Q04941 152 aa12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 ABCA11PQ4W5N1 156 aa12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 TMEM200AQ86VY9 491 aa12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 SEMA6DQ8NFY4 1073 aa12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 OR2AK2Q8NG84 335 aa12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 OR10R2Q8NGX6 335 aa12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 INTS12Q96CB8 462 aaKnown RBP12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 PRO3102Q9H379 93 aa12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 UFSP2Q9NUQ7 469 aa12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 PTTG3PQ9NZH4 202 aa12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 LSM5Q9Y4Y9 91 aaKnown RBP12.06□□□□□ -0.48
CCDC88A-211ENST00000471947 CEP192Q8TEP8 1941 aa12.05□□□□□ -0.48
CCDC88A-211ENST00000471947 MTRF1O75570 445 aaKnown RBP12.05□□□□□ -0.48
CCDC88A-211ENST00000471947 NDUFB6O95139 128 aa12.05□□□□□ -0.48
CCDC88A-211ENST00000471947 SERPINA7P05543 415 aa12.05□□□□□ -0.48
CCDC88A-211ENST00000471947 GAAP10253 952 aa12.05□□□□□ -0.48
CCDC88A-211ENST00000471947 NFYAP23511 347 aaPredicted RBP12.05□□□□□ -0.48
CCDC88A-211ENST00000471947 ZFP36L1Q07352 338 aaKnown RBP12.05□□□□□ -0.48
CCDC88A-211ENST00000471947 SSPNQ14714 243 aa12.05□□□□□ -0.48
CCDC88A-211ENST00000471947 HDDC2Q7Z4H3 204 aa12.05□□□□□ -0.48
CCDC88A-211ENST00000471947 OR51F2Q8NH61 342 aa12.05□□□□□ -0.48
CCDC88A-211ENST00000471947 KCNN3Q9UGI6 736 aa12.05□□□□□ -0.48
CCDC88A-211ENST00000471947 SLC7A11Q9UPY5 501 aa12.05□□□□□ -0.48
CCDC88A-211ENST00000471947 MMP16P51512 607 aa12.05□□□□□ -0.48
CCDC88A-211ENST00000471947 ROM1Q03395 351 aa12.05□□□□□ -0.48
CCDC88A-211ENST00000471947 UBE2V2Q15819 145 aa12.05□□□□□ -0.48
CCDC88A-211ENST00000471947 SKA3Q8IX90 412 aa12.05□□□□□ -0.48
CCDC88A-211ENST00000471947 KCNG3Q8TAE7 436 aa12.05□□□□□ -0.48
CCDC88A-211ENST00000471947 PAQR8Q8TEZ7 354 aa12.05□□□□□ -0.48
CCDC88A-211ENST00000471947 A0A0B4J2A0 478 aa12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 TSPAN4O14817 238 aa12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 ASCL1P50553 236 aa12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 GPM6AP51674 278 aa12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 CEBPGP53567 150 aa12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 ZNF585AQ6P3V2 769 aa12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 GLDNQ6ZMI3 551 aaPredicted RBP12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 DOK3Q7L591 496 aa12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 PEG10Q86TG7 708 aaKnown RBP12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 COMMD7Q86VX2 200 aa12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 CMSS1Q9BQ75 279 aaKnown RBP12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 SHPKQ9UHJ6 478 aa12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 hCG_1807616A0A1W2PRN6 198 aa12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 ERVH48-1M5A8F1 160 aa12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 NGFP01138 241 aa12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 RRASP10301 218 aa12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 DHRS2Q13268 280 aa12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 PDSS1Q5T2R2 415 aa12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 LAMTOR1Q6IAA8 161 aa12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 C9orf62Q8N4C0 152 aa12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 THAP6Q8TBB0 222 aa12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 FLVCR1Q9Y5Y0 555 aa12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 RAB27BO00194 218 aa12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 EFSO43281 561 aa12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 ACKR3P25106 362 aa12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 PTGFRP43088 359 aa12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 HAAOP46952 286 aa12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 H2BFSP57053 126 aa12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 HOXA4Q00056 320 aaPredicted RBP12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 GK2Q14410 553 aaPredicted RBP12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 NDUFA5Q16718 116 aa12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 TEX30Q5JUR7 227 aa12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 C17orf78Q8N4C9 275 aa12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 OR56B2PQ8NGI1 322 aa12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 HAVCR2Q8TDQ0 301 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms