RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 KCNAB3O43448 404 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 DUS4LO95620 317 aaKnown RBP7.83□□□□□ -1.16
SYNE1-217ENST00000466159 UBBP0CG47 229 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 MGMTP16455 207 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 HLA-GP17693 338 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 PI3P19957 117 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 OTX1P32242 354 aaPredicted RBP7.83□□□□□ -1.16
SYNE1-217ENST00000466159 THBS4P35443 961 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 STARP49675 285 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 RPS27AP62979 156 aaKnown RBP7.83□□□□□ -1.16
SYNE1-217ENST00000466159 RIPPLY1Q0D2K3 151 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 JMJD6Q6NYC1 403 aaPredicted RBP7.83□□□□□ -1.16
SYNE1-217ENST00000466159 FAHD2BQ6P2I3 314 aaPredicted RBP7.83□□□□□ -1.16
SYNE1-217ENST00000466159 PPP1R32Q7Z5V6 425 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 C20orf196Q8IYI0 205 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 FAM89BQ8N5H3 189 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.83□□□□□ -1.16
SYNE1-217ENST00000466159 OR1S1Q8NH92 325 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 OR14L1PQ8NHC6 308 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 FAHD2AQ96GK7 314 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 LINC00052Q96N35 136 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 VRK1Q99986 396 aaPredicted RBP7.83□□□□□ -1.16
SYNE1-217ENST00000466159 OCSTAMPQ9BR26 566 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 C5orf66Q9H5L9 145 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 DOCK10Q96BY6 2186 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 A0A0D9SG52 128 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 C13orf42A0A1B0GVH6 325 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 RNF222A6NCQ9 220 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 LGALS8O00214 317 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 SDCBPO00560 298 aaPredicted RBP7.83□□□□□ -1.16
SYNE1-217ENST00000466159 F10P00742 488 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 P04436 131 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 PATE4P0C8F1 98 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 NAT2P11245 290 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 SLC25A4P12235 298 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 BLVRBP30043 206 aaPredicted RBP7.83□□□□□ -1.16
SYNE1-217ENST00000466159 ZNF84P51523 738 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 SUCLG1P53597 346 aaKnown RBP7.83□□□□□ -1.16
SYNE1-217ENST00000466159 RAC3P60763 192 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 BAMBIQ13145 260 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 PNLIPRP3Q17RR3 467 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 CCDC157Q569K6 752 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 FAM74A1Q5RGS3 127 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 FAM27BQ5VT28 67 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 KCNRGQ8N5I3 272 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 OR2AE1Q8NHA4 323 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 ROBO4Q8WZ75 1007 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 ST8SIA2Q92186 375 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 SGK3Q96BR1 496 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 SGCZQ96LD1 299 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 CHST5Q9GZS9 411 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 ELL3Q9HB65 397 aaPredicted RBP7.83□□□□□ -1.16
SYNE1-217ENST00000466159 CRLF2Q9HC73 371 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 PRR13Q9NZ81 148 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 NUP50Q9UKX7 468 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 GPR132Q9UNW8 380 aa7.83□□□□□ -1.16
SYNE1-217ENST00000466159 CCDC187A0A096LP49 1063 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 FOXI3A8MTJ6 420 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-217ENST00000466159 HTR3BO95264 441 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 AMY2BP19961 511 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 TCN2P20062 427 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 CARD18P57730 90 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 HGFACQ04756 655 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 VAX1Q5SQQ9 334 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 TCEAL6Q6IPX3 200 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 GGNQ86UU5 652 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 C1orf210Q8IVY1 113 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 PDZD9Q8IXQ8 264 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 ARMC10Q8N2F6 343 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 OR5H2Q8NGV7 314 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 TCEAL3Q969E4 200 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 TMEM230Q96A57 120 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 ZNF75AQ96N20 296 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 MED9Q9NWA0 146 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 PFDN2Q9UHV9 154 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 TCFL5Q9UL49 500 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 PADI1Q9ULC6 663 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 PCDHGA1Q9Y5H4 931 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 FLVCR1Q9Y5Y0 555 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 C5orf51A6NDU8 294 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 DBX1A6NMT0 343 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 GJE1A6NN92 205 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 CXCL13O43927 109 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 TRAPPC6AO75865 159 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 HPNP05981 417 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 ACKR3P25106 362 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 SRD5A2P31213 254 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 SERPINF1P36955 418 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 DLSTP36957 453 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 ALDH3B1P43353 468 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 LUMP51884 338 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-217ENST00000466159 SNU13P55769 128 aaKnown RBP7.82□□□□□ -1.16
SYNE1-217ENST00000466159 MRPS34P82930 218 aaKnown RBP7.82□□□□□ -1.16
SYNE1-217ENST00000466159 TUSC1Q2TAM9 212 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 TMEM128Q5BJH2 165 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 WIPI1Q5MNZ9 446 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-217ENST00000466159 ZNF774Q6NX45 483 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 SLC23A3Q6PIS1 610 aa7.82□□□□□ -1.16
SYNE1-217ENST00000466159 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.82□□□□□ -1.16
SYNE1-217ENST00000466159 TIPARPQ7Z3E1 657 aaKnown RBP7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 268.1 ms