RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 EMC6Q9BV81 110 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 OR8D2Q9GZM6 311 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 TCEAL2Q9H3H9 227 aaPredicted RBP10.36□□□□□ -0.75
CPSF3-202ENST00000460593 PRTFDC1Q9NRG1 225 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 PNO1Q9NRX1 252 aaKnown RBP10.36□□□□□ -0.75
CPSF3-202ENST00000460593 CLDN16Q9Y5I7 305 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 A0A087X0M5 115 aa10.35□□□□□ -0.75
CPSF3-202ENST00000460593 A0A1B0GX30 115 aa10.35□□□□□ -0.75
CPSF3-202ENST00000460593 C2orf74A8MZ97 194 aa10.35□□□□□ -0.75
CPSF3-202ENST00000460593 GPR89AB7ZAQ6 455 aa10.35□□□□□ -0.75
CPSF3-202ENST00000460593 TNFSF14O43557 240 aa10.35□□□□□ -0.75
CPSF3-202ENST00000460593 KAT7O95251 611 aa10.35□□□□□ -0.75
CPSF3-202ENST00000460593 GPR89BP0CG08 455 aa10.35□□□□□ -0.75
CPSF3-202ENST00000460593 ZNF823P16415 610 aa10.35□□□□□ -0.75
CPSF3-202ENST00000460593 RBP2P50120 134 aa10.35□□□□□ -0.75
CPSF3-202ENST00000460593 NOVA1P51513 510 aaKnown RBP10.35□□□□□ -0.75
CPSF3-202ENST00000460593 SNU13P55769 128 aaKnown RBP10.35□□□□□ -0.75
CPSF3-202ENST00000460593 NFATC4Q14934 902 aa10.35□□□□□ -0.75
CPSF3-202ENST00000460593 SLC22A24Q8N4F4 322 aa10.35□□□□□ -0.75
CPSF3-202ENST00000460593 ZNF519Q8TB69 540 aa10.35□□□□□ -0.75
CPSF3-202ENST00000460593 SLC39A7Q92504 469 aa10.35□□□□□ -0.75
CPSF3-202ENST00000460593 ZDHHC12Q96GR4 267 aa10.35□□□□□ -0.75
CPSF3-202ENST00000460593 NELFAQ9H3P2 528 aa10.35□□□□□ -0.75
CPSF3-202ENST00000460593 TUBA4BQ9H853 241 aa10.35□□□□□ -0.75
CPSF3-202ENST00000460593 UNKLQ9H9P5 680 aaKnown RBP10.35□□□□□ -0.75
CPSF3-202ENST00000460593 ZNF701Q9NV72 531 aaPredicted RBP10.35□□□□□ -0.75
CPSF3-202ENST00000460593 THAP10Q9P2Z0 257 aaPredicted RBP10.35□□□□□ -0.75
CPSF3-202ENST00000460593 DNAJB11Q9UBS4 358 aa10.35□□□□□ -0.75
CPSF3-202ENST00000460593 MRPS28Q9Y2Q9 187 aaKnown RBP10.35□□□□□ -0.75
CPSF3-202ENST00000460593 PHF3Q92576 2039 aaKnown RBP10.35□□□□□ -0.75
CPSF3-202ENST00000460593 BTBD17A6NE02 478 aa10.35□□□□□ -0.75
CPSF3-202ENST00000460593 HIST1H1DP16402 221 aaKnown RBP10.35□□□□□ -0.75
CPSF3-202ENST00000460593 RPS21P63220 83 aaKnown RBP10.35□□□□□ -0.75
CPSF3-202ENST00000460593 EIF5AP63241 154 aaKnown RBP10.35□□□□□ -0.75
CPSF3-202ENST00000460593 GPM6BQ13491 265 aa10.35□□□□□ -0.75
CPSF3-202ENST00000460593 SOHLH1Q5JUK2 328 aa10.35□□□□□ -0.75
CPSF3-202ENST00000460593 FNDC7Q5VTL7 733 aa10.35□□□□□ -0.75
CPSF3-202ENST00000460593 C1orf140Q5VVS0 124 aa10.35□□□□□ -0.75
CPSF3-202ENST00000460593 GGNBP1Q5YKI7 109 aa10.35□□□□□ -0.75
CPSF3-202ENST00000460593 MRPL43Q8N983 215 aaKnown RBP10.35□□□□□ -0.75
CPSF3-202ENST00000460593 DTWD2Q8NBA8 298 aa10.35□□□□□ -0.75
CPSF3-202ENST00000460593 LIPHQ8WWY8 451 aa10.35□□□□□ -0.75
CPSF3-202ENST00000460593 RSC1A1Q92681 617 aa10.35□□□□□ -0.75
CPSF3-202ENST00000460593 MUCL1Q96DR8 90 aa10.35□□□□□ -0.75
CPSF3-202ENST00000460593 FAM71F1Q96KD3 344 aaPredicted RBP10.35□□□□□ -0.75
CPSF3-202ENST00000460593 NUDT22Q9BRQ3 303 aa10.35□□□□□ -0.75
CPSF3-202ENST00000460593 SLC35B3Q9H1N7 401 aa10.35□□□□□ -0.75
CPSF3-202ENST00000460593 CRLF2Q9HC73 371 aa10.35□□□□□ -0.75
CPSF3-202ENST00000460593 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.35□□□□□ -0.75
CPSF3-202ENST00000460593 UBQLN4Q9NRR5 601 aa10.35□□□□□ -0.75
CPSF3-202ENST00000460593 FAM212BQ9NTI7 297 aaPredicted RBP10.35□□□□□ -0.75
CPSF3-202ENST00000460593 TMEM184BQ9Y519 407 aaPredicted RBP10.35□□□□□ -0.75
CPSF3-202ENST00000460593 WDR87Q6ZQQ6 2873 aa10.35□□□□□ -0.75
CPSF3-202ENST00000460593 TDRD6O60522 2096 aaKnown RBP10.35□□□□□ -0.75
CPSF3-202ENST00000460593 CYB5BO43169 146 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 JTBO76095 146 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 PET100P0DJ07 73 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 FPR2P25090 351 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 DDTP30046 118 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 GJA4P35212 333 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 TAGLN2P37802 199 aaKnown RBP10.34□□□□□ -0.75
CPSF3-202ENST00000460593 PMELP40967 661 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 GLO1Q04760 184 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 C1QL2Q7Z5L3 287 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 SUMF2Q8NBJ7 301 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 THRSPQ92748 146 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 YPEL4Q96NS1 127 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 ATG101Q9BSB4 218 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 LMAN1LQ9HAT1 526 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 PISDQ9UG56 409 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 CCDC163A0A0D9SF12 145 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 TMEM14DPA8MWL7 114 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 DEDDO75618 318 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 OPN1LWP04000 364 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 LINC00271P0C7V0 271 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 GIMD1P0DJR0 217 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 CRABP1P29762 137 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 RBMXP38159 391 aaKnown RBP10.34□□□□□ -0.75
CPSF3-202ENST00000460593 PPM1FP49593 454 aaPredicted RBP10.34□□□□□ -0.75
CPSF3-202ENST00000460593 USF2Q15853 346 aaPredicted RBP10.34□□□□□ -0.75
CPSF3-202ENST00000460593 NKAIN3Q8N8D7 197 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 OR14K1Q8NGZ2 314 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 LYPD6BQ8NI32 183 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 FNDC9Q8TBE3 224 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 RAB39BQ96DA2 213 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 GPER1Q99527 375 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 SDK1Q7Z5N4 2213 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 ZNF878C9JN71 531 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 TAAR5O14804 337 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 SLC31A2O15432 143 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 CDC14BO60729 498 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 BPNT1O95861 308 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 DANCRP0C864 163 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 HIST1H1BP16401 226 aaKnown RBP10.34□□□□□ -0.75
CPSF3-202ENST00000460593 RGS19P49795 217 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 SLC35A1P78382 337 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 HMGN3Q15651 99 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 P4HA3Q7Z4N8 544 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 PRSS58Q8IYP2 241 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 C19orf47Q8N9M1 422 aaKnown RBP10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms