RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 RNF26Q9BY78 433 aaPredicted RBP4.69□□□□□ -1.66
VPS41-209ENST00000457055 NXF5Q9H1B4 397 aaKnown RBP4.69□□□□□ -1.66
VPS41-209ENST00000457055 MAP1LC3AQ9H492 121 aa4.69□□□□□ -1.66
VPS41-209ENST00000457055 Q9H521 79 aa4.69□□□□□ -1.66
VPS41-209ENST00000457055 ZBTB20Q9HC78 741 aaPredicted RBP4.69□□□□□ -1.66
VPS41-209ENST00000457055 ENY2Q9NPA8 101 aa4.69□□□□□ -1.66
VPS41-209ENST00000457055 NOX4Q9NPH5 578 aa4.69□□□□□ -1.66
VPS41-209ENST00000457055 OPTCQ9UBM4 332 aa4.69□□□□□ -1.66
VPS41-209ENST00000457055 SIGLEC9Q9Y336 463 aa4.69□□□□□ -1.66
VPS41-209ENST00000457055 COL2A1P02458 1487 aaPredicted RBP4.69□□□□□ -1.66
VPS41-209ENST00000457055 A0A0A6YYD5 115 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 A0A0B4J2E0 115 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 A0A1B0GX12 115 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 SLC22A23A1A5C7 686 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 TMEM150BA6NC51 233 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 C1orf196B1AJZ1 125 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 F8VVB4 439 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 F8VWA3 439 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 DNASE2O00115 360 aaPredicted RBP4.68□□□□□ -1.66
VPS41-209ENST00000457055 PLPP1O14494 284 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 PHF1O43189 567 aaPredicted RBP4.68□□□□□ -1.66
VPS41-209ENST00000457055 DUSP11O75319 330 aaKnown RBP4.68□□□□□ -1.66
VPS41-209ENST00000457055 TTLL1O95922 423 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 CD160O95971 181 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 LIMS3P0CW19 117 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 LIMS4P0CW20 117 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 UNGP13051 313 aaPredicted RBP4.68□□□□□ -1.66
VPS41-209ENST00000457055 IL7P13232 177 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 MGMTP16455 207 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 ZNF17P17021 662 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 HOXB9P17482 250 aaPredicted RBP4.68□□□□□ -1.66
VPS41-209ENST00000457055 PRKACGP22612 351 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 FASP25445 335 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 ITPKBP27987 946 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 S100A2P29034 98 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 GLP1RP43220 463 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 MAGEA5P43359 124 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 P2RY1P47900 373 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 CLDN6P56747 220 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 LOXL3P58215 753 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 SNRPEP62304 92 aaKnown RBP4.68□□□□□ -1.66
VPS41-209ENST00000457055 OC90Q02509 493 aaPredicted RBP4.68□□□□□ -1.66
VPS41-209ENST00000457055 BCL2L1Q07817 233 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 SHHQ15465 462 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 SNRNP35Q16560 246 aaKnown RBP4.68□□□□□ -1.66
VPS41-209ENST00000457055 GUCA2BQ16661 112 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 CDKN3Q16667 212 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 ISXQ2M1V0 245 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 PARP15Q460N3 678 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 CLLU1Q5K131 121 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 NCMAPQ5T1S8 102 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 AWAT2Q6E213 333 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 TOMM20LQ6UXN7 152 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 FA2HQ7L5A8 372 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 C1QL2Q7Z5L3 287 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 IRF2BP2Q7Z5L9 587 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 LINC01551Q86U37 167 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 NOXA1Q86UR1 476 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 IZUMO1Q8IYV9 350 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 ZNF444Q8N0Y2 327 aaPredicted RBP4.68□□□□□ -1.66
VPS41-209ENST00000457055 GCSAMQ8N6F7 178 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 PACRGLQ8N7B6 248 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 VN1R2Q8NFZ6 395 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 OR4L1Q8NH43 312 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 OR5R1Q8NH85 324 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 RPLP0P6Q8NHW5 317 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 PLPPR1Q8TBJ4 325 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 SLC7A13Q8TCU3 470 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 TFB1MQ8WVM0 346 aaKnown RBP4.68□□□□□ -1.66
VPS41-209ENST00000457055 OR8D1Q8WZ84 308 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 OR5P2Q8WZ92 322 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 TFAP2BQ92481 460 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 TAAR8Q969N4 342 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 CCDC126Q96EE4 140 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 FYTTD1Q96QD9 318 aaKnown RBP4.68□□□□□ -1.66
VPS41-209ENST00000457055 RBP7Q96R05 134 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 OR6C1Q96RD1 312 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 OR52E6Q96RD3 313 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 APOL4Q9BPW4 351 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 CMSS1Q9BQ75 279 aaKnown RBP4.68□□□□□ -1.66
VPS41-209ENST00000457055 GINS3Q9BRX5 216 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 RSPO3Q9BXY4 272 aaPredicted RBP4.68□□□□□ -1.66
VPS41-209ENST00000457055 FAM49AQ9H0Q0 323 aaPredicted RBP4.68□□□□□ -1.66
VPS41-209ENST00000457055 SLC17A5Q9NRA2 495 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 SPANXCQ9NY87 97 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 DDX60Q8IY21 1712 aaKnown RBP4.68□□□□□ -1.66
VPS41-209ENST00000457055 GBF1Q92538 1859 aa4.68□□□□□ -1.66
VPS41-209ENST00000457055 USP27XA6NNY8 438 aa4.67□□□□□ -1.66
VPS41-209ENST00000457055 E9PLN8 166 aa4.67□□□□□ -1.66
VPS41-209ENST00000457055 H7C417 338 aa4.67□□□□□ -1.66
VPS41-209ENST00000457055 SMIM22K7EJ46 135 aa4.67□□□□□ -1.66
VPS41-209ENST00000457055 K7ERI5 159 aa4.67□□□□□ -1.66
VPS41-209ENST00000457055 AP4M1O00189 453 aa4.67□□□□□ -1.66
VPS41-209ENST00000457055 MPPED1O15442 326 aa4.67□□□□□ -1.66
VPS41-209ENST00000457055 P2RX6O15547 441 aa4.67□□□□□ -1.66
VPS41-209ENST00000457055 PRKAB2O43741 272 aa4.67□□□□□ -1.66
VPS41-209ENST00000457055 ZG16O60844 167 aa4.67□□□□□ -1.66
VPS41-209ENST00000457055 GRAP2O75791 330 aa4.67□□□□□ -1.66
VPS41-209ENST00000457055 AGFG2O95081 481 aa4.67□□□□□ -1.66
VPS41-209ENST00000457055 C6orf47O95873 294 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms