RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 POFUT1Q9H488 388 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 RANGRFQ9HD47 186 aaPredicted RBP6.55□□□□□ -1.36
SYNE1-213ENST00000448038 SLC23A1Q9UHI7 598 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 CEP250Q9BV73 2442 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 C19orf67A6NJJ6 358 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 OGG1O15527 345 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 ATP6V1G1O75348 118 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 CD59P13987 128 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 RPA2P15927 270 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 ANXA7P20073 488 aaKnown RBP6.55□□□□□ -1.36
SYNE1-213ENST00000448038 DUSP1P28562 367 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 ASAH1Q13510 395 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 HIKESHIQ53FT3 197 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 MAMSTRQ6ZN01 415 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 FAM185AQ8N0U4 392 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 ITPKCQ96DU7 683 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 ZNF285Q96NJ3 590 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 AUNIPQ9H7T9 357 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 FRRS1LQ9P0K9 344 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 A0A1B0GV50 99 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 M0R036 132 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 UPK3AO75631 287 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 PTGFRP43088 359 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 KLF3P57682 345 aaPredicted RBP6.55□□□□□ -1.36
SYNE1-213ENST00000448038 ZFP36L1Q07352 338 aaKnown RBP6.55□□□□□ -1.36
SYNE1-213ENST00000448038 OR51H1Q8NH63 302 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 OR2H1Q9GZK4 316 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 SLC25A31Q9H0C2 315 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 PLEKHB1Q9UF11 243 aaPredicted RBP6.55□□□□□ -1.36
SYNE1-213ENST00000448038 SULT1C2O00338 296 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 WDR1O75083 606 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 KRTCAP3Q53RY4 240 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 FAAP20Q6NZ36 180 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 MRPL14Q6P1L8 145 aaKnown RBP6.54□□□□□ -1.36
SYNE1-213ENST00000448038 CCDC71Q8IV32 467 aaPredicted RBP6.54□□□□□ -1.36
SYNE1-213ENST00000448038 SLIRPQ9GZT3 109 aaKnown RBP6.54□□□□□ -1.36
SYNE1-213ENST00000448038 PLEKHF2Q9H8W4 249 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 PLXNA4Q9HCM2 1894 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 C17orf51A8MQB3 221 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 AGFG2O95081 481 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 CD3DP04234 171 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 CSRP1P21291 193 aaKnown RBP6.54□□□□□ -1.36
SYNE1-213ENST00000448038 NFYAP23511 347 aaPredicted RBP6.54□□□□□ -1.36
SYNE1-213ENST00000448038 MRPS34P82930 218 aaKnown RBP6.54□□□□□ -1.36
SYNE1-213ENST00000448038 RNLSQ5VYX0 342 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 FDCSPQ8NFU4 85 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 OR52N4Q8NGI2 321 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 OR6K3Q8NGY3 331 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 EXTL1Q92935 676 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 IFNA2P01563 188 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 FUT3P21217 361 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 HRH1P35367 487 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 RPL19P84098 196 aaKnown RBP6.54□□□□□ -1.36
SYNE1-213ENST00000448038 FCN2Q15485 313 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 ZNF239Q16600 458 aaKnown RBP6.54□□□□□ -1.36
SYNE1-213ENST00000448038 SLC16A12Q6ZSM3 486 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 NLRC3Q7RTR2 1065 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 Q8IYB0 196 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 ADPRHL1Q8NDY3 354 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 OR4A16Q8NH70 328 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 HGDQ93099 445 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 RIMS4Q9H426 269 aaPredicted RBP6.54□□□□□ -1.36
SYNE1-213ENST00000448038 KLK11Q9UBX7 282 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 ALPK2Q86TB3 2170 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 LRP5LA4QPB2 252 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 SERPINE3A8MV23 424 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 CCL21O00585 134 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 PDCD1Q15116 288 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 BEX5Q5H9J7 111 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 C1orf185Q5T7R7 199 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 GPR157Q5UAW9 335 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 ZNF468Q5VIY5 522 aaPredicted RBP6.54□□□□□ -1.36
SYNE1-213ENST00000448038 C17orf82Q86X59 251 aaPredicted RBP6.54□□□□□ -1.36
SYNE1-213ENST00000448038 SPAG16Q8N0X2 631 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 LGI3Q8N145 548 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 CD300LFQ8TDQ1 290 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 RNF133Q8WVZ7 376 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 TCTEX1D2Q8WW35 142 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 UBL7Q96S82 380 aaPredicted RBP6.54□□□□□ -1.36
SYNE1-213ENST00000448038 EIF5A2Q9GZV4 153 aaKnown RBP6.54□□□□□ -1.36
SYNE1-213ENST00000448038 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP6.54□□□□□ -1.36
SYNE1-213ENST00000448038 CYSLTR2Q9NS75 346 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 NOTCH4Q99466 2003 aa6.54□□□□□ -1.36
SYNE1-213ENST00000448038 IGLV3-12A0A075B6K2 115 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 NTN3O00634 580 aaPredicted RBP6.53□□□□□ -1.36
SYNE1-213ENST00000448038 OR5H8P0DN80 308 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 GLI4P10075 376 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 DCTDP32321 178 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 LUMP51884 338 aaPredicted RBP6.53□□□□□ -1.36
SYNE1-213ENST00000448038 C6orf183Q5T699 404 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 PDZD9Q8IXQ8 264 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 SEH1LQ96EE3 360 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 AKIP1Q9NQ31 210 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 ANAPC1Q9H1A4 1944 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 IFNA4P05014 189 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 CHRNB4P30926 498 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 FCGR2CP31995 323 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 SNCAP37840 140 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 GSK3AP49840 483 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 GUCA2AQ02747 115 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms