RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 ARHGAP5-AS1Q96IT6 56 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 NKX6-2Q9C056 277 aaPredicted RBP12.03□□□□□ -0.48
COL6A3-207ENST00000433762 ZNF319Q9P2F9 582 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 PCDHGA1Q9Y5H4 931 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 KIAA1549Q9HCM3 1950 aa12.02□□□□□ -0.48
COL6A3-207ENST00000433762 LOC100509620A0A075B734 347 aa12.02□□□□□ -0.49
COL6A3-207ENST00000433762 A0A1W2PNR3 127 aa12.02□□□□□ -0.49
COL6A3-207ENST00000433762 CDAP32320 146 aa12.02□□□□□ -0.49
COL6A3-207ENST00000433762 OR3A2P47893 321 aa12.02□□□□□ -0.49
COL6A3-207ENST00000433762 CSNK1A1P48729 337 aa12.02□□□□□ -0.49
COL6A3-207ENST00000433762 ARFRP1Q13795 201 aa12.02□□□□□ -0.49
COL6A3-207ENST00000433762 SGCAQ16586 387 aa12.02□□□□□ -0.49
COL6A3-207ENST00000433762 PABPC1L2AQ5JQF8 200 aa12.02□□□□□ -0.49
COL6A3-207ENST00000433762 EIF5AL1Q6IS14 154 aaKnown RBP12.02□□□□□ -0.49
COL6A3-207ENST00000433762 OPN5Q6U736 354 aa12.02□□□□□ -0.49
COL6A3-207ENST00000433762 PPP1R3BQ86XI6 285 aa12.02□□□□□ -0.49
COL6A3-207ENST00000433762 SVBPQ8N300 66 aa12.02□□□□□ -0.49
COL6A3-207ENST00000433762 MAFAQ8NHW3 353 aaPredicted RBP12.02□□□□□ -0.49
COL6A3-207ENST00000433762 FAM71F1Q96KD3 344 aaPredicted RBP12.02□□□□□ -0.49
COL6A3-207ENST00000433762 RTBDNQ9BSG5 229 aaPredicted RBP12.02□□□□□ -0.49
COL6A3-207ENST00000433762 NAA11Q9BSU3 229 aaPredicted RBP12.02□□□□□ -0.49
COL6A3-207ENST00000433762 MS4A7Q9GZW8 240 aaPredicted RBP12.02□□□□□ -0.49
COL6A3-207ENST00000433762 CYTL1Q9NRR1 136 aa12.02□□□□□ -0.49
COL6A3-207ENST00000433762 DECR2Q9NUI1 292 aa12.02□□□□□ -0.49
COL6A3-207ENST00000433762 EDARQ9UNE0 448 aa12.02□□□□□ -0.49
COL6A3-207ENST00000433762 CARHSP1Q9Y2V2 147 aaKnown RBP12.02□□□□□ -0.49
COL6A3-207ENST00000433762 PRUNE2Q8WUY3 3088 aa12.02□□□□□ -0.49
COL6A3-207ENST00000433762 IGHV5-10-1A0A0J9YXX1 117 aa12.01□□□□□ -0.49
COL6A3-207ENST00000433762 TMEM218A2RU14 115 aa12.01□□□□□ -0.49
COL6A3-207ENST00000433762 ZNF814B7Z6K7 855 aa12.01□□□□□ -0.49
COL6A3-207ENST00000433762 RAD51DO75771 328 aa12.01□□□□□ -0.49
COL6A3-207ENST00000433762 SUPT4H1P63272 117 aaKnown RBP12.01□□□□□ -0.49
COL6A3-207ENST00000433762 HYAL4Q2M3T9 481 aa12.01□□□□□ -0.49
COL6A3-207ENST00000433762 TMEM176BQ3YBM2 270 aaPredicted RBP12.01□□□□□ -0.49
COL6A3-207ENST00000433762 AADACL3Q5VUY0 350 aa12.01□□□□□ -0.49
COL6A3-207ENST00000433762 HAS2Q92819 552 aa12.01□□□□□ -0.49
COL6A3-207ENST00000433762 ZNF416Q9BWM5 594 aa12.01□□□□□ -0.49
COL6A3-207ENST00000433762 FGF5P12034 268 aa12.01□□□□□ -0.49
COL6A3-207ENST00000433762 RPS2P15880 293 aaKnown RBP12.01□□□□□ -0.49
COL6A3-207ENST00000433762 AIMP2Q13155 320 aaKnown RBP12.01□□□□□ -0.49
COL6A3-207ENST00000433762 ATXN7L3Q14CW9 347 aaPredicted RBP12.01□□□□□ -0.49
COL6A3-207ENST00000433762 EXT1Q16394 746 aa12.01□□□□□ -0.49
COL6A3-207ENST00000433762 PDSS1Q5T2R2 415 aa12.01□□□□□ -0.49
COL6A3-207ENST00000433762 CRIP3Q6Q6R5 217 aa12.01□□□□□ -0.49
COL6A3-207ENST00000433762 ZSCAN4Q8NAM6 433 aaPredicted RBP12.01□□□□□ -0.49
COL6A3-207ENST00000433762 POC1AQ8NBT0 407 aa12.01□□□□□ -0.49
COL6A3-207ENST00000433762 OR51T1Q8NGJ9 327 aa12.01□□□□□ -0.49
COL6A3-207ENST00000433762 OR1S2Q8NGQ3 325 aa12.01□□□□□ -0.49
COL6A3-207ENST00000433762 OR2I1PQ8NGU4 316 aa12.01□□□□□ -0.49
COL6A3-207ENST00000433762 OR13G1Q8NGZ3 307 aa12.01□□□□□ -0.49
COL6A3-207ENST00000433762 NAT6Q93015 286 aa12.01□□□□□ -0.49
COL6A3-207ENST00000433762 PECRQ9BY49 303 aa12.01□□□□□ -0.49
COL6A3-207ENST00000433762 ANGPTL4Q9BY76 406 aa12.01□□□□□ -0.49
COL6A3-207ENST00000433762 ZNF160Q9HCG1 818 aa12.01□□□□□ -0.49
COL6A3-207ENST00000433762 MMP26Q9NRE1 261 aa12.01□□□□□ -0.49
COL6A3-207ENST00000433762 PURGQ9UJV8 347 aaKnown RBP12.01□□□□□ -0.49
COL6A3-207ENST00000433762 LY6G6EA0A0G2JKS1 128 aa12□□□□□ -0.49
COL6A3-207ENST00000433762 IL32P24001 234 aa12□□□□□ -0.49
COL6A3-207ENST00000433762 CLDN17P56750 224 aa12□□□□□ -0.49
COL6A3-207ENST00000433762 CSNK2A1P68400 391 aaPredicted RBP12□□□□□ -0.49
COL6A3-207ENST00000433762 ENDOGQ14249 297 aaKnown RBP12□□□□□ -0.49
COL6A3-207ENST00000433762 IL11RAQ14626 422 aa12□□□□□ -0.49
COL6A3-207ENST00000433762 BANF2Q9H503 90 aa12□□□□□ -0.49
COL6A3-207ENST00000433762 ATXN7L1Q9ULK2 861 aaPredicted RBP12□□□□□ -0.49
COL6A3-207ENST00000433762 U3KQA8 63 aa12□□□□□ -0.49
COL6A3-207ENST00000433762 NCOA6Q14686 2063 aaPredicted RBP12□□□□□ -0.49
COL6A3-207ENST00000433762 C13orf42A0A1B0GVH6 325 aa12□□□□□ -0.49
COL6A3-207ENST00000433762 A0A1W2PQM1 296 aa12□□□□□ -0.49
COL6A3-207ENST00000433762 TSPAN9O75954 239 aa12□□□□□ -0.49
COL6A3-207ENST00000433762 CSTBP04080 98 aaKnown RBP12□□□□□ -0.49
COL6A3-207ENST00000433762 NPY4RP50391 375 aa12□□□□□ -0.49
COL6A3-207ENST00000433762 SNU13P55769 128 aaKnown RBP12□□□□□ -0.49
COL6A3-207ENST00000433762 DSCR4P56555 118 aaPredicted RBP12□□□□□ -0.49
COL6A3-207ENST00000433762 FOXL2P58012 376 aa12□□□□□ -0.49
COL6A3-207ENST00000433762 FLI1Q01543 452 aaPredicted RBP12□□□□□ -0.49
COL6A3-207ENST00000433762 PCOLCEQ15113 449 aa12□□□□□ -0.49
COL6A3-207ENST00000433762 BEX5Q5H9J7 111 aa12□□□□□ -0.49
COL6A3-207ENST00000433762 CARD17Q5XLA6 110 aa12□□□□□ -0.49
COL6A3-207ENST00000433762 RELTQ969Z4 430 aa12□□□□□ -0.49
COL6A3-207ENST00000433762 NABP1Q96AH0 204 aa12□□□□□ -0.49
COL6A3-207ENST00000433762 SPSB1Q96BD6 273 aa12□□□□□ -0.49
COL6A3-207ENST00000433762 POM121Q96HA1 1249 aa12□□□□□ -0.49
COL6A3-207ENST00000433762 LYZL4Q96KX0 146 aa12□□□□□ -0.49
COL6A3-207ENST00000433762 MESP1Q9BRJ9 268 aa12□□□□□ -0.49
COL6A3-207ENST00000433762 TNRC6BQ9UPQ9 1833 aaKnown RBP12□□□□□ -0.49
COL6A3-207ENST00000433762 CACNA1EQ15878 2313 aa12□□□□□ -0.49
COL6A3-207ENST00000433762 H0YIZ8 118 aa11.99□□□□□ -0.49
COL6A3-207ENST00000433762 K7ESF4 209 aa11.99□□□□□ -0.49
COL6A3-207ENST00000433762 YKT6O15498 198 aa11.99□□□□□ -0.49
COL6A3-207ENST00000433762 SLC2A1P11166 492 aa11.99□□□□□ -0.49
COL6A3-207ENST00000433762 CCL7P80098 99 aa11.99□□□□□ -0.49
COL6A3-207ENST00000433762 ATRAIDQ6UW56 229 aa11.99□□□□□ -0.49
COL6A3-207ENST00000433762 TMEM123Q8N131 208 aa11.99□□□□□ -0.49
COL6A3-207ENST00000433762 CSNK2A3Q8NEV1 391 aa11.99□□□□□ -0.49
COL6A3-207ENST00000433762 M1APQ8TC57 530 aa11.99□□□□□ -0.49
COL6A3-207ENST00000433762 SPTSSAQ969W0 71 aa11.99□□□□□ -0.49
COL6A3-207ENST00000433762 CCDC74BQ96LY2 380 aa11.99□□□□□ -0.49
COL6A3-207ENST00000433762 SPACA5Q96QH8 159 aa11.99□□□□□ -0.49
COL6A3-207ENST00000433762 S100A13Q99584 98 aa11.99□□□□□ -0.49
COL6A3-207ENST00000433762 SOX7Q9BT81 388 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms