RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 A6NIN4 97 aa8.64□□□□□ -1.03
CD44-207ENST00000425428 SIAH2O43255 324 aa8.64□□□□□ -1.03
CD44-207ENST00000425428 IRF2P14316 349 aa8.64□□□□□ -1.03
CD44-207ENST00000425428 ATF1P18846 271 aa8.64□□□□□ -1.03
CD44-207ENST00000425428 BDKRB2P30411 391 aa8.64□□□□□ -1.03
CD44-207ENST00000425428 SOX6P35712 828 aa8.64□□□□□ -1.03
CD44-207ENST00000425428 RBP2P50120 134 aa8.64□□□□□ -1.03
CD44-207ENST00000425428 CEACAM21Q3KPI0 293 aa8.64□□□□□ -1.03
CD44-207ENST00000425428 ALKBH6Q3KRA9 238 aa8.64□□□□□ -1.03
CD44-207ENST00000425428 CD200R1LQ6Q8B3 271 aa8.64□□□□□ -1.03
CD44-207ENST00000425428 Q6ZSR3 168 aa8.64□□□□□ -1.03
CD44-207ENST00000425428 OR1M1Q8NGA1 313 aa8.64□□□□□ -1.03
CD44-207ENST00000425428 OR13C5Q8NGS8 318 aa8.64□□□□□ -1.03
CD44-207ENST00000425428 OR13C9Q8NGT0 318 aa8.64□□□□□ -1.03
CD44-207ENST00000425428 OR10AC1Q8NH08 325 aa8.64□□□□□ -1.03
CD44-207ENST00000425428 RNF166Q96A37 237 aaPredicted RBP8.64□□□□□ -1.03
CD44-207ENST00000425428 TMIGD2Q96BF3 282 aa8.64□□□□□ -1.03
CD44-207ENST00000425428 ELMOD3Q96FG2 381 aa8.64□□□□□ -1.03
CD44-207ENST00000425428 RNF170Q96K19 258 aa8.64□□□□□ -1.03
CD44-207ENST00000425428 SLC30A2Q9BRI3 323 aa8.64□□□□□ -1.03
CD44-207ENST00000425428 OR51E2Q9H255 320 aa8.64□□□□□ -1.03
CD44-207ENST00000425428 CXXC4Q9H2H0 198 aa8.64□□□□□ -1.03
CD44-207ENST00000425428 PCDHB16Q9NRJ7 776 aa8.64□□□□□ -1.03
CD44-207ENST00000425428 TXNL4BQ9NX01 149 aaKnown RBP8.64□□□□□ -1.03
CD44-207ENST00000425428 SF3B6Q9Y3B4 125 aaKnown RBP8.64□□□□□ -1.03
CD44-207ENST00000425428 RHBDD3Q9Y3P4 386 aa8.64□□□□□ -1.03
CD44-207ENST00000425428 TRAV1-2A0A0B4J238 106 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 FAM230AA0A1W2PPH8 454 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 TMEM210A6NLX4 147 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 SLC22A1O15245 554 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 SPRY3O43610 288 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 ALX3O95076 343 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 MAS1P04201 325 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 UCHL1P09936 223 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 FSTP19883 344 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 CRYBB2P43320 205 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 CAPZA1P52907 286 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 MTCP1P56278 107 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 LSM3P62310 102 aaKnown RBP8.63□□□□□ -1.03
CD44-207ENST00000425428 GNG3P63215 75 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 TNFAIP6P98066 277 aaPredicted RBP8.63□□□□□ -1.03
CD44-207ENST00000425428 CEP78Q5JTW2 689 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 UNQ9370/PRO34162Q6UXP9 181 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 USP43Q70EL4 1123 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 ZNF573Q86YE8 665 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 DNAAF1Q8NEP3 725 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 NEUROG1Q92886 237 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 ADAT3Q96EY9 351 aaPredicted RBP8.63□□□□□ -1.03
CD44-207ENST00000425428 TRMT61AQ96FX7 289 aaKnown RBP8.63□□□□□ -1.03
CD44-207ENST00000425428 CCL19Q99731 98 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 FAM192AQ9GZU8 254 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 MSL2Q9HCI7 577 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 GPR173Q9NS66 373 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 TAS2R4Q9NYW5 299 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 RSL24D1Q9UHA3 163 aaKnown RBP8.63□□□□□ -1.03
CD44-207ENST00000425428 LAMP3Q9UQV4 416 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 HELZ2Q9BYK8 2649 aaKnown RBP8.63□□□□□ -1.03
CD44-207ENST00000425428 C5orf63A6NC05 138 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 A6NLC8 198 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 LRRC30A6NM36 301 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 C17orf100A8MU93 164 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 RAB3BP20337 219 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 ACKR3P25106 362 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 AZGP1P25311 298 aaKnown RBP8.63□□□□□ -1.03
CD44-207ENST00000425428 LOXP28300 417 aaPredicted RBP8.63□□□□□ -1.03
CD44-207ENST00000425428 ALDH3B1P43353 468 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 SERPINB10P48595 397 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 MTNR1BP49286 362 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 PPOXP50336 477 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 PRSS12P56730 875 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 RPS11P62280 158 aaKnown RBP eCLIP8.63□□□□□ -1.03
CD44-207ENST00000425428 TESK1Q15569 626 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 DDI2Q5TDH0 399 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 LRP11Q86VZ4 500 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 CDH26Q8IXH8 852 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 JAGN1Q8N5M9 183 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 OR11L1Q8NGX0 322 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 ZNF671Q8TAW3 534 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 RGP1Q92546 391 aaPredicted RBP8.63□□□□□ -1.03
CD44-207ENST00000425428 HPS1Q92902 700 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 SORCS2Q96PQ0 1159 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 PLGRKTQ9HBL7 147 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 IL19Q9UHD0 177 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 POLDIP2Q9Y2S7 368 aa8.63□□□□□ -1.03
CD44-207ENST00000425428 TRBV5-7A0A0A0MS05 114 aa8.62□□□□□ -1.03
CD44-207ENST00000425428 FAM221AA4D161 298 aa8.62□□□□□ -1.03
CD44-207ENST00000425428 ZNF732B4DXR9 585 aa8.62□□□□□ -1.03
CD44-207ENST00000425428 IFNL4K9M1U5 179 aa8.62□□□□□ -1.03
CD44-207ENST00000425428 ZNF701M0R085 212 aaPredicted RBP8.62□□□□□ -1.03
CD44-207ENST00000425428 GPX5O75715 221 aa8.62□□□□□ -1.03
CD44-207ENST00000425428 GABARAPO95166 117 aa8.62□□□□□ -1.03
CD44-207ENST00000425428 ALDOBP05062 364 aa8.62□□□□□ -1.03
CD44-207ENST00000425428 NAT2P11245 290 aa8.62□□□□□ -1.03
CD44-207ENST00000425428 ZNF93P35789 620 aaPredicted RBP8.62□□□□□ -1.03
CD44-207ENST00000425428 GPM6AP51674 278 aa8.62□□□□□ -1.03
CD44-207ENST00000425428 MKXQ8IYA7 352 aa8.62□□□□□ -1.03
CD44-207ENST00000425428 CELF2-AS1Q8N7Q2 184 aa8.62□□□□□ -1.03
CD44-207ENST00000425428 LILRB1Q8NHL6 650 aaPredicted RBP8.62□□□□□ -1.03
CD44-207ENST00000425428 TRMT10AQ8TBZ6 339 aaKnown RBP8.62□□□□□ -1.03
CD44-207ENST00000425428 NPRL2Q8WTW4 380 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms