RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 LSM5Q9Y4Y9 91 aaKnown RBP9.46□□□□□ -0.9
USP54-204ENST00000422491 A0A0J9YY10 115 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 A0A1W2PP11 408 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 ZNF727A8MUV8 499 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 SYT7O43581 403 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 KNG1P01042 644 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 IFNA10P01566 189 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 RNH1P13489 461 aaKnown RBP9.46□□□□□ -0.9
USP54-204ENST00000422491 PPP1CCP36873 323 aaKnown RBP9.46□□□□□ -0.9
USP54-204ENST00000422491 SEC13P55735 322 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 PKIAP61925 76 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 LSM6P62312 80 aaKnown RBP9.46□□□□□ -0.9
USP54-204ENST00000422491 DEFB110Q30KQ9 67 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 SOHLH1Q5JUK2 328 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 GFI1BQ5VTD9 330 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 RTL10Q7L3V2 364 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 SEMA6DQ8NFY4 1073 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 OR14C36Q8NHC7 312 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 RNF133Q8WVZ7 376 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 OR11A1Q9GZK7 315 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 SH3BGRL3Q9H299 93 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 FAM60AQ9NP50 221 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 PRTFDC1Q9NRG1 225 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 ZNF823P16415 610 aa9.45□□□□□ -0.9
USP54-204ENST00000422491 RBMXP38159 391 aaKnown RBP9.45□□□□□ -0.9
USP54-204ENST00000422491 APOBEC1P41238 236 aaKnown RBP9.45□□□□□ -0.9
USP54-204ENST00000422491 OR3A2P47893 321 aa9.45□□□□□ -0.9
USP54-204ENST00000422491 PPP1CAP62136 330 aa9.45□□□□□ -0.9
USP54-204ENST00000422491 RSU1Q15404 277 aa9.45□□□□□ -0.9
USP54-204ENST00000422491 KHDC3LQ587J8 217 aa9.45□□□□□ -0.9
USP54-204ENST00000422491 LCN10Q6JVE6 187 aa9.45□□□□□ -0.9
USP54-204ENST00000422491 ZNF343Q6P1L6 599 aa9.45□□□□□ -0.9
USP54-204ENST00000422491 TSACCQ96A04 125 aaPredicted RBP9.45□□□□□ -0.9
USP54-204ENST00000422491 RARRES2Q99969 163 aa9.45□□□□□ -0.9
USP54-204ENST00000422491 GPR61Q9BZJ8 451 aa9.45□□□□□ -0.9
USP54-204ENST00000422491 SMDT1Q9H4I9 107 aa9.45□□□□□ -0.9
USP54-204ENST00000422491 BANF2Q9H503 90 aa9.45□□□□□ -0.9
USP54-204ENST00000422491 EHFQ9NZC4 300 aa9.45□□□□□ -0.9
USP54-204ENST00000422491 MRPS28Q9Y2Q9 187 aaKnown RBP9.45□□□□□ -0.9
USP54-204ENST00000422491 ARHGEF17Q96PE2 2063 aaPredicted RBP9.45□□□□□ -0.9
USP54-204ENST00000422491 ZNF724A8MTY0 619 aa9.45□□□□□ -0.9
USP54-204ENST00000422491 PLPP3O14495 311 aa9.45□□□□□ -0.9
USP54-204ENST00000422491 TERTO14746 1132 aaKnown RBP9.45□□□□□ -0.9
USP54-204ENST00000422491 PLRG1O43660 514 aaKnown RBP9.45□□□□□ -0.9
USP54-204ENST00000422491 FKTNO75072 461 aa9.45□□□□□ -0.9
USP54-204ENST00000422491 NPIPB7O75200 414 aa9.45□□□□□ -0.9
USP54-204ENST00000422491 H2BFMP0C1H6 154 aa9.45□□□□□ -0.9
USP54-204ENST00000422491 OR3A4PP47883 348 aa9.45□□□□□ -0.9
USP54-204ENST00000422491 SLC6A8P48029 635 aa9.45□□□□□ -0.9
USP54-204ENST00000422491 SNU13P55769 128 aaKnown RBP9.45□□□□□ -0.9
USP54-204ENST00000422491 TAS2R46P59540 309 aa9.45□□□□□ -0.9
USP54-204ENST00000422491 CD81P60033 236 aa9.45□□□□□ -0.9
USP54-204ENST00000422491 FMODQ06828 376 aa9.45□□□□□ -0.9
USP54-204ENST00000422491 ZNF674Q2M3X9 581 aa9.45□□□□□ -0.9
USP54-204ENST00000422491 HIKESHIQ53FT3 197 aa9.45□□□□□ -0.9
USP54-204ENST00000422491 GGNBP1Q5YKI7 109 aa9.45□□□□□ -0.9
USP54-204ENST00000422491 SUMF2Q8NBJ7 301 aa9.45□□□□□ -0.9
USP54-204ENST00000422491 LFNGQ8NES3 379 aa9.45□□□□□ -0.9
USP54-204ENST00000422491 KCNG3Q8TAE7 436 aa9.45□□□□□ -0.9
USP54-204ENST00000422491 MRPL24Q96A35 216 aaKnown RBP9.45□□□□□ -0.9
USP54-204ENST00000422491 ST6GALNAC5Q9BVH7 336 aa9.45□□□□□ -0.9
USP54-204ENST00000422491 TMEM59Q9BXS4 323 aa9.45□□□□□ -0.9
USP54-204ENST00000422491 CENPMQ9NSP4 180 aa9.45□□□□□ -0.9
USP54-204ENST00000422491 PRODH2Q9UF12 536 aa9.45□□□□□ -0.9
USP54-204ENST00000422491 A0A087WWC5 75 aa9.44□□□□□ -0.9
USP54-204ENST00000422491 A0A087X0M5 115 aa9.44□□□□□ -0.9
USP54-204ENST00000422491 BORCS7-ASMTA0A0B4J1R7 106 aa9.44□□□□□ -0.9
USP54-204ENST00000422491 A0A1B0GX30 115 aa9.44□□□□□ -0.9
USP54-204ENST00000422491 MED19A0JLT2 244 aaPredicted RBP9.44□□□□□ -0.9
USP54-204ENST00000422491 ZNF726A6NNF4 738 aa9.44□□□□□ -0.9
USP54-204ENST00000422491 ZNF587BE7ETH6 402 aa9.44□□□□□ -0.9
USP54-204ENST00000422491 K7N7A8 449 aa9.44□□□□□ -0.9
USP54-204ENST00000422491 HCRTR2O43614 444 aa9.44□□□□□ -0.9
USP54-204ENST00000422491 PRH1P02810 166 aa9.44□□□□□ -0.9
USP54-204ENST00000422491 HNRNPA1P09651 372 aaKnown RBP eCLIP9.44□□□□□ -0.9
USP54-204ENST00000422491 HLA-DOBP13765 273 aa9.44□□□□□ -0.9
USP54-204ENST00000422491 ERVFRD-1P60508 538 aa9.44□□□□□ -0.9
USP54-204ENST00000422491 CSNK2A1P68400 391 aaPredicted RBP9.44□□□□□ -0.9
USP54-204ENST00000422491 TDGQ13569 410 aa9.44□□□□□ -0.9
USP54-204ENST00000422491 HIST2H2ABQ8IUE6 130 aaPredicted RBP9.44□□□□□ -0.9
USP54-204ENST00000422491 OR5AS1Q8N127 324 aa9.44□□□□□ -0.9
USP54-204ENST00000422491 CSNK2A3Q8NEV1 391 aa9.44□□□□□ -0.9
USP54-204ENST00000422491 PATE1Q8WXA2 126 aa9.44□□□□□ -0.9
USP54-204ENST00000422491 RAB39BQ96DA2 213 aa9.44□□□□□ -0.9
USP54-204ENST00000422491 C2orf88Q9BSF0 95 aa9.44□□□□□ -0.9
USP54-204ENST00000422491 PBOV1Q9GZY1 135 aa9.44□□□□□ -0.9
USP54-204ENST00000422491 NXF5Q9H1B4 397 aaKnown RBP9.44□□□□□ -0.9
USP54-204ENST00000422491 C14orf166Q9Y224 244 aaKnown RBP9.44□□□□□ -0.9
USP54-204ENST00000422491 HS3ST3B1Q9Y662 390 aa9.44□□□□□ -0.9
USP54-204ENST00000422491 UNC80Q8N2C7 3258 aa9.44□□□□□ -0.9
USP54-204ENST00000422491 ELOA3CA0A087WX78 387 aaPredicted RBP9.44□□□□□ -0.9
USP54-204ENST00000422491 IGKV1D-43A0A0B4J1Z2 117 aa9.44□□□□□ -0.9
USP54-204ENST00000422491 E5RGE8 158 aa9.44□□□□□ -0.9
USP54-204ENST00000422491 H3BQ15 152 aa9.44□□□□□ -0.9
USP54-204ENST00000422491 PPP1R2P9O14990 202 aa9.44□□□□□ -0.9
USP54-204ENST00000422491 MBPP02686 304 aaPredicted RBP9.44□□□□□ -0.9
USP54-204ENST00000422491 SPCS3P61009 180 aa9.44□□□□□ -0.9
USP54-204ENST00000422491 ACY1Q03154 408 aa9.44□□□□□ -0.9
USP54-204ENST00000422491 ARFRP1Q13795 201 aa9.44□□□□□ -0.9
USP54-204ENST00000422491 UBE2V2Q15819 145 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms