RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 TIMM10BQ9Y5J6 103 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 MYOM1P52179 1685 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 MFSD2BA6NFX1 497 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 FECHP22830 423 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 PNRC1Q12796 327 aaPredicted RBP12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 XKR7Q5GH72 579 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 C1orf140Q5VVS0 124 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 SLC25A43Q8WUT9 341 aaPredicted RBP12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 ADTRPQ96IZ2 230 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 CSF3RQ99062 836 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 P01737 135 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 MGPP08493 103 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 APOBEC1P41238 236 aaKnown RBP12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 CDKN3Q16667 212 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 SLC25A33Q9BSK2 321 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 SH2D2AQ9NP31 389 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 UQCC1Q9NVA1 299 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 ZNF840PA6NDX5 716 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 CRHP06850 196 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 FADS6Q8N9I5 356 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 BCL7CQ8WUZ0 217 aaPredicted RBP12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 ANKRD36A6QL64 1941 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 SPATA31D1Q6ZQQ2 1576 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 M0R1B8 84 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 APCSP02743 223 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 SPRYD7Q5W111 196 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 TMEM183AQ8IXX5 376 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 OR2T10Q8NGZ9 312 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 FAM174AQ8TBP5 190 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 CLDN23Q96B33 292 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 IGSF21Q96ID5 467 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 TMEM129A0AVI4 362 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 DGCR2P98153 550 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 KMT5CQ86Y97 462 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 BVESQ8NE79 360 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 PFN4Q8NHR9 129 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 OR6C1Q96RD1 312 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 MMP24Q9Y5R2 645 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 ZNF815PA8K554 130 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 TMPRSS11DO60235 418 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 OPRM1P35372 400 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 TNFRSF4P43489 277 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 C12orf54Q6X4T0 127 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 SDCBPO00560 298 aaPredicted RBP12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 DHRS3O75911 302 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 CCL5P13501 91 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 ERV3-1Q14264 604 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 TCEAL1Q15170 157 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 HLA-DRB5Q30154 266 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 LINC00469Q8N7U9 141 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 PERPQ96FX8 193 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 NARFLQ9H6Q4 476 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 USP22Q9UPT9 525 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 HSPB2A8KAH6 182 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 HSPB2Q16082 182 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 PNLIPRP3Q17RR3 467 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 TMEM128Q5BJH2 165 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 DUSP18Q8NEJ0 188 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 RNF39Q9H2S5 420 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 ZNF77Q15935 545 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 OR13G1Q8NGZ3 307 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 ZNF778Q96MU6 729 aa12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 PSMG3Q9BT73 122 aaPredicted RBP12.1□□□□□ -0.47
CCDC88A-204ENST00000413716 ZBTB25P24278 435 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 OR6C3Q9NZP0 311 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 KCND3Q9UK17 655 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 TCFL5Q9UL49 500 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 Q9Y3F1 56 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 FAM186AA6NE01 2351 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 BTF3P20290 206 aaKnown RBP12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 NKAIN1Q4KMZ8 207 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 ANKLE1Q8NAG6 615 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 ZNF502Q8TBZ5 544 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 CLEC4DQ8WXI8 215 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 WDR89Q96FK6 387 aaPredicted RBP12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 A0A1W2PPC4 97 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 CD96P40200 585 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 COMPP49747 757 aaPredicted RBP12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 MNX1P50219 401 aaPredicted RBP12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 WNT3P56703 355 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 IGFBP7Q16270 282 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 OR5M11Q96RB7 305 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 CLEC2DQ9UHP7 191 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 CYB5R1Q9UHQ9 305 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 LIPGQ9Y5X9 500 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 SCN11AQ9UI33 1791 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 PRLHRP49683 370 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 AESQ08117 197 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 RUNX3Q13761 415 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 DPPA3Q6W0C5 159 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 TAAR2Q9P1P5 351 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 RPL27P61353 136 aaKnown RBP12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 FCRL6Q6DN72 434 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 ZNF841Q6ZN19 808 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 Q6ZNX1 250 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 C11orf87Q6NUJ2 197 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 PARD6GQ9BYG4 376 aaPredicted RBP12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 FUT2Q10981 343 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 AGBL5Q8NDL9 886 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 HIST1H4GQ99525 98 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 89.4 ms