RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 METAP1P53582 386 aa8.33□□□□□ -1.08
COL28A1-201ENST00000399429 RPS23P62266 143 aaKnown RBP8.33□□□□□ -1.08
COL28A1-201ENST00000399429 HIST1H3AP68431 136 aa8.33□□□□□ -1.08
COL28A1-201ENST00000399429 ZNF92Q03936 586 aa8.33□□□□□ -1.08
COL28A1-201ENST00000399429 UNQ9370/PRO34162Q6UXP9 181 aa8.33□□□□□ -1.08
COL28A1-201ENST00000399429 LHX4Q969G2 390 aa8.33□□□□□ -1.08
COL28A1-201ENST00000399429 THY1P04216 161 aa8.33□□□□□ -1.08
COL28A1-201ENST00000399429 LAG3P18627 525 aa8.33□□□□□ -1.08
COL28A1-201ENST00000399429 STARD6P59095 220 aa8.33□□□□□ -1.08
COL28A1-201ENST00000399429 MPV17LQ2QL34 196 aa8.33□□□□□ -1.08
COL28A1-201ENST00000399429 TSPO2Q5TGU0 170 aa8.33□□□□□ -1.08
COL28A1-201ENST00000399429 SLC16A14Q7RTX9 510 aa8.33□□□□□ -1.08
COL28A1-201ENST00000399429 SMIM15Q7Z3B0 74 aa8.33□□□□□ -1.08
COL28A1-201ENST00000399429 MRPL24Q96A35 216 aaKnown RBP8.33□□□□□ -1.08
COL28A1-201ENST00000399429 ARRDC3Q96B67 414 aa8.33□□□□□ -1.08
COL28A1-201ENST00000399429 C1orf198Q9H425 327 aa8.33□□□□□ -1.08
COL28A1-201ENST00000399429 CERS4Q9HA82 394 aa8.33□□□□□ -1.08
COL28A1-201ENST00000399429 ZNF160Q9HCG1 818 aa8.33□□□□□ -1.08
COL28A1-201ENST00000399429 LHX9Q9NQ69 397 aa8.33□□□□□ -1.08
COL28A1-201ENST00000399429 SLC5A6Q9Y289 635 aa8.33□□□□□ -1.08
COL28A1-201ENST00000399429 UBR3Q6ZT12 1888 aa8.33□□□□□ -1.08
COL28A1-201ENST00000399429 FAM186AA6NE01 2351 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 A0A1W2PQU0 124 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 FIGNL2A6NMB9 653 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 RAMP1O60894 148 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 PSMB3P49720 205 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 FGF8P55075 233 aaPredicted RBP8.32□□□□□ -1.08
COL28A1-201ENST00000399429 SUMO1P63165 101 aaKnown RBP8.32□□□□□ -1.08
COL28A1-201ENST00000399429 TNFRSF9Q07011 255 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 GRASPQ7Z6J2 395 aaPredicted RBP8.32□□□□□ -1.08
COL28A1-201ENST00000399429 OR5C1Q8NGR4 320 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 OR4F5Q8NH21 305 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 OR4F4Q96R69 305 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 TBX15Q96SF7 602 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 EMC6Q9BV81 110 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 MYOTQ9UBF9 498 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 A0A087WUJ7 227 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 E9PQ18 207 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 OPN1MWP04001 364 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 PGA3P0DJD8 388 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 OPN1MW2P0DN77 364 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 OPN1MW3P0DN78 364 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 GALR1P47211 349 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 OR1D4P47884 311 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 CLN3Q13286 438 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 RUNX2Q13950 521 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 FZD2Q14332 565 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 ZAR1Q86SH2 424 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 BATF2Q8N1L9 274 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 IL22RA1Q8N6P7 574 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 LINC01555Q8NAE3 123 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 OR52N5Q8NH56 324 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 MOGAT1Q96PD6 335 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 NDUFAF3Q9BU61 184 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 SBF2Q86WG5 1849 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 CD300LBA8K4G0 201 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 C17orf105B2RV13 164 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 OR7C1O76099 320 aaPredicted RBP8.32□□□□□ -1.08
COL28A1-201ENST00000399429 BPNT1O95861 308 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 GSTP1P09211 210 aaKnown RBP8.32□□□□□ -1.08
COL28A1-201ENST00000399429 SEC11BP0C7V7 166 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 CCNOP22674 350 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 S100A7P31151 101 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 HNRNPA3P51991 378 aaKnown RBP8.32□□□□□ -1.08
COL28A1-201ENST00000399429 MTCP1P56278 107 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 HSD17B7P56937 341 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 RPL27P61353 136 aaKnown RBP8.32□□□□□ -1.08
COL28A1-201ENST00000399429 WDR25Q64LD2 544 aaPredicted RBP8.32□□□□□ -1.08
COL28A1-201ENST00000399429 UEVLDQ8IX04 471 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 OR4C3Q8NH37 302 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 DYRK2Q92630 601 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 HIST1H2AAQ96QV6 131 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 WBP1LQ9NX94 342 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 KLRF1Q9NZS2 232 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 R4GMQ9 66 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 TPRP12270 2363 aaKnown RBP8.32□□□□□ -1.08
COL28A1-201ENST00000399429 MASP2O00187 686 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 SOCS1O15524 211 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 TGM5O43548 720 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 EIF4E2O60573 245 aaKnown RBP8.32□□□□□ -1.08
COL28A1-201ENST00000399429 HIST1H2BKO60814 126 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 HIST1H2BJP06899 126 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 NTF3P20783 257 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 HIST1H2BOP23527 126 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 HIST1H2BBP33778 126 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 MMP16P51512 607 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 HIST1H2BDP58876 126 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 HIST1H2BCP62807 126 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 FAM3AP98173 230 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 HIST2H2BEQ16778 126 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 ZNF542PQ5EBM4 170 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.32□□□□□ -1.08
COL28A1-201ENST00000399429 CHRDL2Q6WN34 429 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 ZNF547Q8IVP9 402 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 PRR18Q8N4B5 295 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 TMEM234Q8WY98 164 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 HIST1H2BHQ93079 126 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 SMIM8Q96KF7 97 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 TECTBQ96PL2 329 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 AQP10Q96PS8 301 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms