RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 BCL2L2Q92843 193 aaPredicted RBP8.86□□□□□ -0.99
VPS53-202ENST00000389040 C14orf79Q96F83 325 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 ALKBH3Q96Q83 286 aaPredicted RBP8.86□□□□□ -0.99
VPS53-202ENST00000389040 FOXB1Q99853 325 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 PBOV1Q9GZY1 135 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 MOB1AQ9H8S9 216 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 ZNF275Q9NSD4 429 aaPredicted RBP8.86□□□□□ -0.99
VPS53-202ENST00000389040 MRPL15Q9P015 296 aaKnown RBP8.86□□□□□ -0.99
VPS53-202ENST00000389040 ASH2LQ9UBL3 628 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 KLK11Q9UBX7 282 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 ADGRG4Q8IZF6 3080 aa8.85□□□□□ -0.99
VPS53-202ENST00000389040 C7orf66A4D0T2 115 aa8.85□□□□□ -0.99
VPS53-202ENST00000389040 NAP1L6A6NFF2 107 aa8.85□□□□□ -0.99
VPS53-202ENST00000389040 TTRP02766 147 aa8.85□□□□□ -0.99
VPS53-202ENST00000389040 GSTT2BP0CG30 244 aa8.85□□□□□ -0.99
VPS53-202ENST00000389040 CD37P11049 281 aa8.85□□□□□ -0.99
VPS53-202ENST00000389040 PTHLHP12272 177 aa8.85□□□□□ -0.99
VPS53-202ENST00000389040 HSD11B1P28845 292 aa8.85□□□□□ -0.99
VPS53-202ENST00000389040 CCKARP32238 428 aa8.85□□□□□ -0.99
VPS53-202ENST00000389040 BTN2A1Q7KYR7 527 aa8.85□□□□□ -0.99
VPS53-202ENST00000389040 RHOUQ7L0Q8 258 aa8.85□□□□□ -0.99
VPS53-202ENST00000389040 NOXA1Q86UR1 476 aa8.85□□□□□ -0.99
VPS53-202ENST00000389040 OR51A2Q8NGJ7 313 aa8.85□□□□□ -0.99
VPS53-202ENST00000389040 CAPSLQ8WWF8 208 aa8.85□□□□□ -0.99
VPS53-202ENST00000389040 NANOS1Q8WY41 292 aaKnown RBP8.85□□□□□ -0.99
VPS53-202ENST00000389040 SLC25A28Q96A46 364 aa8.85□□□□□ -0.99
VPS53-202ENST00000389040 S100PBPQ96BU1 408 aa8.85□□□□□ -0.99
VPS53-202ENST00000389040 WFIKKN1Q96NZ8 548 aa8.85□□□□□ -0.99
VPS53-202ENST00000389040 NIPAL2Q9H841 368 aa8.85□□□□□ -0.99
VPS53-202ENST00000389040 HRASLSQ9HDD0 168 aa8.85□□□□□ -0.99
VPS53-202ENST00000389040 ING3Q9NXR8 418 aa8.85□□□□□ -0.99
VPS53-202ENST00000389040 TMEM272A0A1B0GTI8 110 aa8.84□□□□□ -0.99
VPS53-202ENST00000389040 ANKRD20A5PA0PJZ0 165 aa8.84□□□□□ -0.99
VPS53-202ENST00000389040 A1L4Q6 167 aa8.84□□□□□ -0.99
VPS53-202ENST00000389040 C19orf84I3L1E1 186 aa8.84□□□□□ -0.99
VPS53-202ENST00000389040 SYT7O43581 403 aa8.84□□□□□ -0.99
VPS53-202ENST00000389040 LMX1BO60663 402 aa8.84□□□□□ -0.99
VPS53-202ENST00000389040 H2AFB2P0C5Z0 115 aa8.84□□□□□ -0.99
VPS53-202ENST00000389040 CRYGSP22914 178 aa8.84□□□□□ -0.99
VPS53-202ENST00000389040 GRNP28799 593 aaKnown RBP8.84□□□□□ -0.99
VPS53-202ENST00000389040 RAG2P55895 527 aa8.84□□□□□ -0.99
VPS53-202ENST00000389040 UBE2NP61088 152 aaKnown RBP8.84□□□□□ -0.99
VPS53-202ENST00000389040 MRPS15P82914 257 aaKnown RBP8.84□□□□□ -0.99
VPS53-202ENST00000389040 ARF1P84077 181 aaKnown RBP8.84□□□□□ -0.99
VPS53-202ENST00000389040 SPOCK1Q08629 439 aa8.84□□□□□ -0.99
VPS53-202ENST00000389040 TAF13Q15543 124 aa8.84□□□□□ -0.99
VPS53-202ENST00000389040 GLYATL3Q5SZD4 288 aa8.84□□□□□ -0.99
VPS53-202ENST00000389040 FAM27BQ5VT28 67 aa8.84□□□□□ -0.99
VPS53-202ENST00000389040 OLFML2AQ68BL7 652 aa8.84□□□□□ -0.99
VPS53-202ENST00000389040 DNM1P46Q6ZS02 220 aa8.84□□□□□ -0.99
VPS53-202ENST00000389040 FOXL2NBQ6ZUU3 175 aa8.84□□□□□ -0.99
VPS53-202ENST00000389040 NKAIN3Q8N8D7 197 aa8.84□□□□□ -0.99
VPS53-202ENST00000389040 OR56B4Q8NH76 319 aa8.84□□□□□ -0.99
VPS53-202ENST00000389040 RADILQ96JH8 1075 aa8.84□□□□□ -0.99
VPS53-202ENST00000389040 RNF170Q96K19 258 aa8.84□□□□□ -0.99
VPS53-202ENST00000389040 NKX3-1Q99801 234 aaPredicted RBP8.84□□□□□ -0.99
VPS53-202ENST00000389040 GHITMQ9H3K2 345 aa8.84□□□□□ -0.99
VPS53-202ENST00000389040 KCNK15Q9H427 330 aa8.84□□□□□ -0.99
VPS53-202ENST00000389040 PNRC2Q9NPJ4 139 aaKnown RBP8.84□□□□□ -0.99
VPS53-202ENST00000389040 DIABLOQ9NR28 239 aa8.84□□□□□ -0.99
VPS53-202ENST00000389040 TMEM38BQ9NVV0 291 aa8.84□□□□□ -0.99
VPS53-202ENST00000389040 CGGBP1Q9UFW8 167 aaPredicted RBP8.84□□□□□ -0.99
VPS53-202ENST00000389040 LOC390937A0A1W2PQ73 354 aa8.84□□□□□ -1
VPS53-202ENST00000389040 RER1O15258 196 aa8.84□□□□□ -1
VPS53-202ENST00000389040 GMDSO60547 372 aa8.84□□□□□ -1
VPS53-202ENST00000389040 RAD51DO75771 328 aa8.84□□□□□ -1
VPS53-202ENST00000389040 SSTR2P30874 369 aa8.84□□□□□ -1
VPS53-202ENST00000389040 PCBD1P61457 104 aa8.84□□□□□ -1
VPS53-202ENST00000389040 PPA1Q15181 289 aa8.84□□□□□ -1
VPS53-202ENST00000389040 BEX5Q5H9J7 111 aa8.84□□□□□ -1
VPS53-202ENST00000389040 ELFN2Q5R3F8 820 aa8.84□□□□□ -1
VPS53-202ENST00000389040 PHYHD1Q5SRE7 291 aa8.84□□□□□ -1
VPS53-202ENST00000389040 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.84□□□□□ -1
VPS53-202ENST00000389040 BIVMQ86UB2 503 aa8.84□□□□□ -1
VPS53-202ENST00000389040 SLC22A24Q8N4F4 322 aa8.84□□□□□ -1
VPS53-202ENST00000389040 JAGN1Q8N5M9 183 aa8.84□□□□□ -1
VPS53-202ENST00000389040 PHF21AQ96BD5 680 aa8.84□□□□□ -1
VPS53-202ENST00000389040 FGGYQ96C11 551 aa8.84□□□□□ -1
VPS53-202ENST00000389040 C20orf85Q9H1P6 137 aa8.84□□□□□ -1
VPS53-202ENST00000389040 MED28Q9H204 178 aa8.84□□□□□ -1
VPS53-202ENST00000389040 NELFAQ9H3P2 528 aa8.84□□□□□ -1
VPS53-202ENST00000389040 CRIM1Q9NZV1 1036 aa8.84□□□□□ -1
VPS53-202ENST00000389040 SLC25A15Q9Y619 301 aa8.84□□□□□ -1
VPS53-202ENST00000389040 INTS1Q8N201 2190 aaKnown RBP8.83□□□□□ -1
VPS53-202ENST00000389040 A0A1B0GVI7 797 aa8.83□□□□□ -1
VPS53-202ENST00000389040 FAM221AA4D161 298 aa8.83□□□□□ -1
VPS53-202ENST00000389040 H7C417 338 aa8.83□□□□□ -1
VPS53-202ENST00000389040 MSR1P21757 451 aa8.83□□□□□ -1
VPS53-202ENST00000389040 STOMP27105 288 aa8.83□□□□□ -1
VPS53-202ENST00000389040 ARR3P36575 388 aa8.83□□□□□ -1
VPS53-202ENST00000389040 LSM6P62312 80 aaKnown RBP8.83□□□□□ -1
VPS53-202ENST00000389040 MAB21L1Q13394 359 aa8.83□□□□□ -1
VPS53-202ENST00000389040 GSG1Q2KHT4 349 aa8.83□□□□□ -1
VPS53-202ENST00000389040 TMEM255AQ5JRV8 349 aa8.83□□□□□ -1
VPS53-202ENST00000389040 C1orf100Q5SVJ3 147 aa8.83□□□□□ -1
VPS53-202ENST00000389040 SFRP4Q6FHJ7 346 aaPredicted RBP8.83□□□□□ -1
VPS53-202ENST00000389040 ZNF813Q6ZN06 617 aa8.83□□□□□ -1
VPS53-202ENST00000389040 CDH24Q86UP0 819 aa8.83□□□□□ -1
VPS53-202ENST00000389040 LINC01560Q8TB33 94 aa8.83□□□□□ -1
VPS53-202ENST00000389040 FOXRED1Q96CU9 486 aaPredicted RBP8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms