RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 SFT2D2O95562 160 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 BCL3P20749 454 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 FPGSQ05932 587 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 SQSTM1Q13501 440 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 ZNF542PQ5EBM4 170 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 FAM72AQ5TYM5 149 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 FAM72DQ6L9T8 149 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 FAM72BQ86X60 149 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 OR5AS1Q8N127 324 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 OR5C1Q8NGR4 320 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 DIO2Q92813 273 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 HMX2A2RU54 273 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 C17orf105B2RV13 164 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 CDS2O95674 445 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 CDKN2AP42771 156 aaKnown RBP11.42□□□□□ -0.58
COL6A3-203ENST00000353578 C1orf220Q5T0J3 134 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 SCGB1D4Q6XE38 83 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 LIPIQ6XZB0 460 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 KREMEN2Q8NCW0 462 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 HIST1H1EP10412 219 aaKnown RBP11.42□□□□□ -0.58
COL6A3-203ENST00000353578 RABIFP47224 123 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 GNG10P50151 68 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 DUSP8Q13202 625 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 TMEM147Q9BVK8 224 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 KLRG2A4D1S0 409 aaPredicted RBP11.42□□□□□ -0.58
COL6A3-203ENST00000353578 SLC10A3P09131 477 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 Q6ZPB1 254 aaPredicted RBP11.42□□□□□ -0.58
COL6A3-203ENST00000353578 OR2C3Q8N628 320 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 KTI12Q96EK9 354 aaPredicted RBP11.42□□□□□ -0.58
COL6A3-203ENST00000353578 NXT1Q9UKK6 140 aaKnown RBP11.42□□□□□ -0.58
COL6A3-203ENST00000353578 A4GNTQ9UNA3 340 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 ANKRD20A5PA0PJZ0 165 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 SEMA4FO95754 770 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 ANKRD34CP0C6C1 535 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 DEFA4P12838 97 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 FCARP24071 287 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 OR8B8Q15620 311 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 C12orf73Q69YU5 71 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 SFRP2Q96HF1 295 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 ULBP2Q9BZM5 246 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 MED20Q9H944 212 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 PLAGL1Q9UM63 463 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 COL1A1P02452 1464 aaPredicted RBP11.42□□□□□ -0.58
COL6A3-203ENST00000353578 UBE2L5PA0A1B0GUS4 154 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 PRAMEF25A6NGN4 478 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 RPL27P61353 136 aaKnown RBP11.42□□□□□ -0.58
COL6A3-203ENST00000353578 OR5A1Q8NGJ0 315 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 S1PR3Q99500 378 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 OR6C3Q9NZP0 311 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 C11orf94C9JXX5 98 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 SPANXN5Q5MJ07 72 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 PTX4Q96A99 478 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 PLA2G12AQ9BZM1 189 aa11.42□□□□□ -0.58
COL6A3-203ENST00000353578 FEZF1A0PJY2 475 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 F7P08709 466 aaPredicted RBP11.41□□□□□ -0.58
COL6A3-203ENST00000353578 CST5P28325 142 aaPredicted RBP11.41□□□□□ -0.58
COL6A3-203ENST00000353578 ACAA2P42765 397 aaKnown RBP11.41□□□□□ -0.58
COL6A3-203ENST00000353578 AGFG1P52594 562 aaKnown RBP11.41□□□□□ -0.58
COL6A3-203ENST00000353578 AESQ08117 197 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 MARCH1Q8TCQ1 289 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 PARP12Q9H0J9 701 aaKnown RBP11.41□□□□□ -0.58
COL6A3-203ENST00000353578 SPATA6Q9NWH7 488 aaPredicted RBP11.41□□□□□ -0.58
COL6A3-203ENST00000353578 FOXJ2Q9P0K8 574 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 V9GYH0 126 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 J3KTA2 159 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 M0R296 226 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 APOBEC1P41238 236 aaKnown RBP11.41□□□□□ -0.58
COL6A3-203ENST00000353578 CEBPDP49716 269 aaPredicted RBP11.41□□□□□ -0.58
COL6A3-203ENST00000353578 Q6ZSR9 355 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 SLC25A42Q86VD7 318 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 C19orf47Q8N9M1 422 aaKnown RBP11.41□□□□□ -0.58
COL6A3-203ENST00000353578 ADAT3Q96EY9 351 aaPredicted RBP11.41□□□□□ -0.58
COL6A3-203ENST00000353578 SMG9Q9H0W8 520 aaKnown RBP11.41□□□□□ -0.58
COL6A3-203ENST00000353578 CA2P00918 260 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 TYMSP04818 313 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 RPS4Y1P22090 263 aaKnown RBP11.41□□□□□ -0.58
COL6A3-203ENST00000353578 ZNF789Q5FWF6 425 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 TMEM136Q6ZRR5 245 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 TMEM151BQ8IW70 566 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 SLC25A33Q9BSK2 321 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 A0A0B4J293 547 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 TCRBV21S2A2A0A5A6 115 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 KLK8O60259 260 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 SLC35E2P0CK97 266 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 C21orf58P58505 322 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 SH2D2AQ9NP31 389 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 TRAV9-1A0A075B6T8 112 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 IGHEP01854 428 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 ICAM2P13598 275 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 TIMP2P16035 220 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 NRIP2Q9BQI9 281 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 NAA60Q9H7X0 242 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 WRAP73Q9P2S5 460 aaPredicted RBP11.41□□□□□ -0.58
COL6A3-203ENST00000353578 RCL1Q9Y2P8 373 aaKnown RBP11.41□□□□□ -0.58
COL6A3-203ENST00000353578 MMACHCQ9Y4U1 282 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 A0A1B0GWA3 101 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 PITX3O75364 302 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 NMBP08949 121 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 BCL2P10415 239 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 C17orf67Q0P5P2 114 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms