RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 URGCP-MRPS24S4R325 110 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 PRSS38A1L453 326 aa6□□□□□ -1.45
VPS39-202ENST00000348544 FIGNL2A6NMB9 653 aa6□□□□□ -1.45
VPS39-202ENST00000348544 A8MVM7 634 aa6□□□□□ -1.45
VPS39-202ENST00000348544 ZNF587BE7ETH6 402 aa6□□□□□ -1.45
VPS39-202ENST00000348544 MPIG6BO95866 241 aa6□□□□□ -1.45
VPS39-202ENST00000348544 TTRP02766 147 aa6□□□□□ -1.45
VPS39-202ENST00000348544 TRGC2P03986 189 aa6□□□□□ -1.45
VPS39-202ENST00000348544 GSTP1P09211 210 aaKnown RBP6□□□□□ -1.45
VPS39-202ENST00000348544 FABP4P15090 132 aa6□□□□□ -1.45
VPS39-202ENST00000348544 AMY2BP19961 511 aa6□□□□□ -1.45
VPS39-202ENST00000348544 C5AR1P21730 350 aa6□□□□□ -1.45
VPS39-202ENST00000348544 SUCLG1P53597 346 aaKnown RBP6□□□□□ -1.45
VPS39-202ENST00000348544 CASP6P55212 293 aa6□□□□□ -1.45
VPS39-202ENST00000348544 PPP1CAP62136 330 aa6□□□□□ -1.45
VPS39-202ENST00000348544 FMODQ06828 376 aa6□□□□□ -1.45
VPS39-202ENST00000348544 UBE2V2Q15819 145 aa6□□□□□ -1.45
VPS39-202ENST00000348544 SOHLH1Q5JUK2 328 aa6□□□□□ -1.45
VPS39-202ENST00000348544 DNLZQ5SXM8 178 aa6□□□□□ -1.45
VPS39-202ENST00000348544 PLPP4Q5VZY2 271 aa6□□□□□ -1.45
VPS39-202ENST00000348544 TGIF2LXQ8IUE1 241 aa6□□□□□ -1.45
VPS39-202ENST00000348544 OR10AD1Q8NGE0 317 aa6□□□□□ -1.45
VPS39-202ENST00000348544 SCARF2Q96GP6 870 aaPredicted RBP6□□□□□ -1.45
VPS39-202ENST00000348544 RBM14Q96PK6 669 aaKnown RBP6□□□□□ -1.45
VPS39-202ENST00000348544 OR2M4Q96R27 311 aa6□□□□□ -1.45
VPS39-202ENST00000348544 SUCNR1Q9BXA5 334 aa6□□□□□ -1.45
VPS39-202ENST00000348544 OR10A5Q9H207 317 aa6□□□□□ -1.45
VPS39-202ENST00000348544 SRPK3Q9UPE1 567 aa6□□□□□ -1.45
VPS39-202ENST00000348544 B3GALT5Q9Y2C3 310 aa6□□□□□ -1.45
VPS39-202ENST00000348544 A0A1W2PQU0 124 aa6□□□□□ -1.45
VPS39-202ENST00000348544 OR5H15A6NDH6 313 aa6□□□□□ -1.45
VPS39-202ENST00000348544 OR5H1A6NKK0 313 aa6□□□□□ -1.45
VPS39-202ENST00000348544 H0YL77 283 aa6□□□□□ -1.45
VPS39-202ENST00000348544 H3BQ15 152 aa6□□□□□ -1.45
VPS39-202ENST00000348544 K7N7A8 449 aa6□□□□□ -1.45
VPS39-202ENST00000348544 PPP1R2P9O14990 202 aa6□□□□□ -1.45
VPS39-202ENST00000348544 CDC14BO60729 498 aa6□□□□□ -1.45
VPS39-202ENST00000348544 SCGNO76038 276 aa6□□□□□ -1.45
VPS39-202ENST00000348544 SCGB1D2O95969 90 aa6□□□□□ -1.45
VPS39-202ENST00000348544 IFNA10P01566 189 aa6□□□□□ -1.45
VPS39-202ENST00000348544 SNRPCP09234 159 aaKnown RBP6□□□□□ -1.45
VPS39-202ENST00000348544 SERPINA2P20848 420 aa6□□□□□ -1.45
VPS39-202ENST00000348544 ANOS1P23352 680 aa6□□□□□ -1.45
VPS39-202ENST00000348544 OR3A4PP47883 348 aa6□□□□□ -1.45
VPS39-202ENST00000348544 ACY1Q03154 408 aa6□□□□□ -1.45
VPS39-202ENST00000348544 BIKQ13323 160 aa6□□□□□ -1.45
VPS39-202ENST00000348544 DEFB110Q30KQ9 67 aa6□□□□□ -1.45
VPS39-202ENST00000348544 HIKESHIQ53FT3 197 aa6□□□□□ -1.45
VPS39-202ENST00000348544 GGNBP1Q5YKI7 109 aa6□□□□□ -1.45
VPS39-202ENST00000348544 GLIPR1L1Q6UWM5 242 aa6□□□□□ -1.45
VPS39-202ENST00000348544 RD3Q7Z3Z2 195 aa6□□□□□ -1.45
VPS39-202ENST00000348544 LRRC18Q8N456 261 aa6□□□□□ -1.45
VPS39-202ENST00000348544 SUMF2Q8NBJ7 301 aa6□□□□□ -1.45
VPS39-202ENST00000348544 SLC26A10Q8NG04 563 aa6□□□□□ -1.45
VPS39-202ENST00000348544 BAHD1Q8TBE0 780 aaPredicted RBP6□□□□□ -1.45
VPS39-202ENST00000348544 FNDC9Q8TBE3 224 aa6□□□□□ -1.45
VPS39-202ENST00000348544 ABHD5Q8WTS1 349 aa6□□□□□ -1.45
VPS39-202ENST00000348544 OR1E3Q8WZA6 343 aa6□□□□□ -1.45
VPS39-202ENST00000348544 TMEM68Q96MH6 324 aa6□□□□□ -1.45
VPS39-202ENST00000348544 ST6GALNAC5Q9BVH7 336 aa6□□□□□ -1.45
VPS39-202ENST00000348544 OR11A1Q9GZK7 315 aa6□□□□□ -1.45
VPS39-202ENST00000348544 TXNIPQ9H3M7 391 aa6□□□□□ -1.45
VPS39-202ENST00000348544 BCO1Q9HAY6 547 aa6□□□□□ -1.45
VPS39-202ENST00000348544 FAM206AQ9NX38 181 aa6□□□□□ -1.45
VPS39-202ENST00000348544 EHFQ9NZC4 300 aa6□□□□□ -1.45
VPS39-202ENST00000348544 TMED3Q9Y3Q3 217 aa6□□□□□ -1.45
VPS39-202ENST00000348544 IGKV1D-8A0A087WSZ0 117 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 IGKV1D-43A0A0B4J1Z2 117 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 A0A1B0GW64 132 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 TSTD3H0UI37 97 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 HSD17B6O14756 317 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 ATXN7O15265 892 aaPredicted RBP5.99□□□□□ -1.45
VPS39-202ENST00000348544 MBPP02686 304 aaPredicted RBP5.99□□□□□ -1.45
VPS39-202ENST00000348544 PRH1P02810 166 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 HEXBP07686 556 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 CHRM2P08172 466 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 LINC00271P0C7V0 271 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 HLA-DOBP13765 273 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 ZNF93P35789 620 aaPredicted RBP5.99□□□□□ -1.45
VPS39-202ENST00000348544 P2RY1P47900 373 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 ZNF117Q03924 483 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 CHAF1BQ13112 559 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 SGCBQ16585 318 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 CNKSR3Q6P9H4 555 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 PLXDC2Q6UX71 529 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 NUP54Q7Z3B4 507 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 SFTPA2Q8IWL1 248 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 OR5AS1Q8N127 324 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 ARHGEF39Q8N4T4 335 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 ZNF321PQ8N8H1 164 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 HSD17B11Q8NBQ5 300 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 RNASE11Q8TAA1 199 aaKnown RBP5.99□□□□□ -1.45
VPS39-202ENST00000348544 FAM213BQ8TBF2 198 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 FRZBQ92765 325 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 LURAP1Q96LR2 239 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 WDR92Q96MX6 357 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 SCGB3A2Q96PL1 93 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 ABHD14AQ9BUJ0 271 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 PBDC1Q9BVG4 233 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 NELFAQ9H3P2 528 aa5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms