RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 PRAMEF26H0Y7S4 382 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 PRAMEF4O60810 478 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 PRAMEF11O60813 436 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 PTHP01270 115 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 IGHV3-9P01782 118 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 HPXP02790 462 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 ERVS71-1P61550 626 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 PRAMEF5Q5TYX0 476 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 PRAMEF9Q5VWM5 478 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 PRAMEF6Q5VXH4 476 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 PECRQ9BY49 303 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 SLC52A3Q9NQ40 469 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 OPN4Q9UHM6 478 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 TCRBV21S2A2A0A5A6 115 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 NPIPB13A6NJU9 1138 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 NPIPB4C9JG80 1138 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 MT-CO3P00414 261 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 TGFAP01135 160 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 IGHA1P01876 353 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 TACR1P25103 407 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 TCL1AP56279 114 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 C2orf68Q2NKX9 166 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 CCSMST1Q4G0I0 132 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 ABHD4Q8TB40 342 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 ZNF160Q9HCG1 818 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 GADD45GO95257 159 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 FDXRP22570 491 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 NCR3LG1Q68D85 454 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 LHFPL2Q6ZUX7 228 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 YAF2Q8IY57 180 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 JAGN1Q8N5M9 183 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 FER1L6-AS2Q96M78 137 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 CDIPTO14735 213 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 ACAA1P09110 424 aaPredicted RBP3.2□□□□□ -1.9
SYNE1-201ENST00000341594 SEC11BP0C7V7 166 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 PNMTP11086 282 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 ABOP16442 354 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 OR56B1Q8NGI3 324 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 RXFP4Q8TDU9 374 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 HIVEP3Q5T1R4 2406 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 ITGB1BP1O14713 200 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 PRF1P14222 555 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 FGF8P55075 233 aaPredicted RBP3.2□□□□□ -1.9
SYNE1-201ENST00000341594 OR2T2Q6IF00 324 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 ZNF740Q8NDX6 193 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 PPCDCQ96CD2 204 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 TRBV5-3A0A0A0MS03 114 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 TRAPPC2LH3BP13 241 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 H7C2G1 150 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 BMP8BP34820 402 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 CDX1P47902 265 aaPredicted RBP3.2□□□□□ -1.9
SYNE1-201ENST00000341594 ELLP55199 621 aaPredicted RBP3.2□□□□□ -1.9
SYNE1-201ENST00000341594 DMWDQ09019 674 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 COA6Q5JTJ3 125 aaKnown RBP3.2□□□□□ -1.9
SYNE1-201ENST00000341594 BMP8AQ7Z5Y6 402 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 TMEM99Q8N816 258 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 ZNF610Q8N9Z0 462 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 APH1AQ96BI3 265 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 NXT1Q9UKK6 140 aaKnown RBP3.2□□□□□ -1.9
SYNE1-201ENST00000341594 IGLV3-10A0A075B6K4 115 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 NSG1A0A0A6YYJ2 146 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 OOEPA6NGQ2 149 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 ARHGEF39Q8N4T4 335 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 SLC2A13Q96QE2 648 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 MARCH2Q9P0N8 246 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 SLC23A2Q9UGH3 650 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 TMEFF2Q9UIK5 374 aaPredicted RBP3.2□□□□□ -1.9
SYNE1-201ENST00000341594 DHRS7CA6NNS2 312 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 TLX3O43711 291 aaPredicted RBP3.2□□□□□ -1.9
SYNE1-201ENST00000341594 TCN2P20062 427 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 SLC25A1P53007 311 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 C1QTNF8P60827 252 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 INSM1Q01101 510 aaPredicted RBP3.2□□□□□ -1.9
SYNE1-201ENST00000341594 ALG10Q5BKT4 473 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 ALG10BQ5I7T1 473 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 MFSD12Q6NUT3 480 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 LCNL1Q6ZST4 164 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 SELENOHQ8IZQ5 122 aaKnown RBP3.2□□□□□ -1.9
SYNE1-201ENST00000341594 BEST3Q8N1M1 668 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 STXBP6Q8NFX7 210 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 SLC25A28Q96A46 364 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 RAB37Q96AX2 223 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 MBOAT4Q96T53 435 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 ARPC3O15145 178 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 ZNF264O43296 627 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 RHOCP08134 193 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 CTSL3PQ5NE16 218 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 DHRS11Q6UWP2 260 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 OR51A2Q8NGJ7 313 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 ANKRD9Q96BM1 317 aaPredicted RBP3.19□□□□□ -1.9
SYNE1-201ENST00000341594 PRRG4Q9BZD6 226 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 PCTPQ9UKL6 214 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 DTX4Q9Y2E6 619 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 K7EQM0 130 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 RRP8O43159 456 aaKnown RBP3.19□□□□□ -1.9
SYNE1-201ENST00000341594 SLC25A12O75746 678 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 BPIP17213 487 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 SFTPA2Q8IWL1 248 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 OR4D5Q8NGN0 318 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 OR51F2Q8NH61 342 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms