RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 TRAPPC6BQ86SZ2 158 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 RDH10Q8IZV5 341 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 ST7LQ8TDW4 575 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 ZNF431Q8TF32 576 aaPredicted RBP6.08□□□□□ -1.44
SF3B1-201ENST00000335508 SMAP2Q8WU79 429 aaPredicted RBP6.08□□□□□ -1.44
SF3B1-201ENST00000335508 LINC00470Q9BZP3 86 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 TMEM100Q9NV29 134 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 TMEM235A6NFC5 223 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 TMEM200CA6NKL6 621 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 HYAL3O43820 417 aaPredicted RBP6.07□□□□□ -1.44
SF3B1-201ENST00000335508 KNG1P01042 644 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 CTSBP07858 339 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 OR5H8P0DN80 308 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 NBL1P41271 181 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 KCNJ3P48549 501 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 CCDC190Q86UF4 302 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 FAM185AQ8N0U4 392 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 SLC30A7Q8NEW0 376 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 ASB13Q8WXK3 278 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 OR14J1Q9UGF5 321 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 ZNF107Q9UII5 783 aaPredicted RBP6.07□□□□□ -1.44
SF3B1-201ENST00000335508 KCNS2Q9ULS6 477 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 CHST2Q9Y4C5 530 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 TCF20Q9UGU0 1960 aaKnown RBP6.07□□□□□ -1.44
SF3B1-201ENST00000335508 SHISA8B8ZZ34 492 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 SH2D1BO14796 132 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 SSX5O60225 188 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 RFX2P48378 723 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 CLDN20P56880 219 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 CD200R1LQ6Q8B3 271 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 ZNF767PQ75MW2 155 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 TUSC5Q8IXB3 177 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 ZNF610Q8N9Z0 462 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 IL1F10Q8WWZ1 152 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 UCN2Q96RP3 112 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 S1PR3Q99500 378 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 ZNF471Q9BX82 626 aaPredicted RBP6.07□□□□□ -1.44
SF3B1-201ENST00000335508 NMNAT2Q9BZQ4 307 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 ZNF71Q9NQZ8 489 aaPredicted RBP6.07□□□□□ -1.44
SF3B1-201ENST00000335508 TAS2R5Q9NYW4 299 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 TAS2R4Q9NYW5 299 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 KIF25Q9UIL4 384 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 ST3GAL6Q9Y274 331 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 IGLV1-36A0A0B4J1U3 117 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 TERTO14746 1132 aaKnown RBP6.07□□□□□ -1.44
SF3B1-201ENST00000335508 SFTPBP07988 381 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 CAMK2BQ13554 666 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 KISS1Q15726 138 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 SSX1Q16384 188 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 ZBTB37Q5TC79 503 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 ZNF774Q6NX45 483 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 MED30Q96HR3 178 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 ZNF385AQ96PM9 386 aaKnown RBP6.07□□□□□ -1.44
SF3B1-201ENST00000335508 FKBP14Q9NWM8 211 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 GREB1Q4ZG55 1949 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 TGFBR3LH3BV60 316 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 NME2P1O60361 137 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 NME2P22392 152 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 ID4P47928 161 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 SELENOPP49908 381 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 MECP2P51608 486 aaKnown RBP6.07□□□□□ -1.44
SF3B1-201ENST00000335508 PLA2G2CQ5R387 149 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 C17orf78Q8N4C9 275 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 ZNF611Q8N823 705 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 OR5M9Q8NGP3 310 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 RDH5Q92781 318 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 ELMOD3Q96FG2 381 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 CHIAQ9BZP6 476 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 CHST5Q9GZS9 411 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 FNDC1Q4ZHG4 1894 aaPredicted RBP6.07□□□□□ -1.44
SF3B1-201ENST00000335508 LOC101059948A0A1B0GTJ6 334 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 SNU13P55769 128 aaKnown RBP6.07□□□□□ -1.44
SF3B1-201ENST00000335508 CD83Q01151 205 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 C19orf57Q0VDD7 668 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 PRSS53Q2L4Q9 553 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 C2orf76Q3KRA6 126 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 ZNF385CQ66K41 422 aaPredicted RBP6.07□□□□□ -1.44
SF3B1-201ENST00000335508 CDC20BQ86Y33 519 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 OR5A2Q8NGI9 324 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 ZNF703Q9H7S9 590 aaPredicted RBP6.07□□□□□ -1.44
SF3B1-201ENST00000335508 LUZP4Q9P127 313 aa6.07□□□□□ -1.44
SF3B1-201ENST00000335508 IGKV1D-42A0A075B6H8 117 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 SCAF4O95104 1147 aaKnown RBP6.06□□□□□ -1.44
SF3B1-201ENST00000335508 HLA-AP01891 365 aaKnown RBP6.06□□□□□ -1.44
SF3B1-201ENST00000335508 CD3EP07766 207 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 UMODP07911 640 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 ZNF728P0DKX0 622 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 MPV17LQ2QL34 196 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 VHLLQ6RSH7 139 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 ABHD3Q8WU67 409 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 FAM122AQ96E09 287 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 SFXN3Q9BWM7 321 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 TOR1AO14656 332 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 DEGS1O15121 323 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 MAGEB4O15481 346 aaPredicted RBP6.06□□□□□ -1.44
SF3B1-201ENST00000335508 SURF2Q15527 256 aaPredicted RBP6.06□□□□□ -1.44
SF3B1-201ENST00000335508 TRAT1Q6PIZ9 186 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 ZNF695Q8IW36 515 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 OSR2Q8N2R0 312 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 OR10R2Q8NGX6 335 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms