RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 GALNT4Q8N4A0 578 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 OR51G2Q8NGK0 314 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 FAM81AQ8TBF8 368 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 ASB17Q8WXJ9 295 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 OR5P3Q8WZ94 311 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 PIGCQ92535 297 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 FAM71F1Q96KD3 344 aaPredicted RBP13.56□□□□□ -0.24
LSM1-201ENST00000311351 APOL4Q9BPW4 351 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 RTL8AQ9BWD3 113 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 OSBPL10Q9BXB5 764 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 PBOV1Q9GZY1 135 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 TLNRD1Q9H1K6 362 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 RASSF4Q9H2L5 321 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 H2AFY2Q9P0M6 372 aaPredicted RBP13.56□□□□□ -0.24
LSM1-201ENST00000311351 DUX4Q9UBX2 424 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 NUP50Q9UKX7 468 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 GTF2A1LQ9UNN4 478 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 MPC1Q9Y5U8 109 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 TENM1Q9UKZ4 2725 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 A0A0U1RQV5 110 aa13.55□□□□□ -0.24
LSM1-201ENST00000311351 CDIPTO14735 213 aa13.55□□□□□ -0.24
LSM1-201ENST00000311351 TNFRSF13BO14836 293 aaPredicted RBP13.55□□□□□ -0.24
LSM1-201ENST00000311351 ZNF254O75437 659 aa13.55□□□□□ -0.24
LSM1-201ENST00000311351 SRSF10O75494 262 aaKnown RBP13.55□□□□□ -0.24
LSM1-201ENST00000311351 CST4P01036 141 aa13.55□□□□□ -0.24
LSM1-201ENST00000311351 GMFBP60983 142 aa13.55□□□□□ -0.24
LSM1-201ENST00000311351 SNCBQ16143 134 aa13.55□□□□□ -0.24
LSM1-201ENST00000311351 ZNF829Q3KNS6 432 aaPredicted RBP13.55□□□□□ -0.24
LSM1-201ENST00000311351 DMRTC1Q5HYR2 192 aa13.55□□□□□ -0.24
LSM1-201ENST00000311351 TEX36Q5VZQ5 186 aa13.55□□□□□ -0.24
LSM1-201ENST00000311351 KCTD8Q6ZWB6 473 aa13.55□□□□□ -0.24
LSM1-201ENST00000311351 SSX6Q7RTT6 188 aa13.55□□□□□ -0.24
LSM1-201ENST00000311351 ZDHHC23Q8IYP9 409 aa13.55□□□□□ -0.24
LSM1-201ENST00000311351 FGFRL1Q8N441 504 aa13.55□□□□□ -0.24
LSM1-201ENST00000311351 SIGLECL1Q8N7X8 197 aa13.55□□□□□ -0.24
LSM1-201ENST00000311351 OR51E1Q8TCB6 317 aa13.55□□□□□ -0.24
LSM1-201ENST00000311351 RPL3LQ92901 407 aaKnown RBP13.55□□□□□ -0.24
LSM1-201ENST00000311351 RAB3IPQ96QF0 476 aaPredicted RBP13.55□□□□□ -0.24
LSM1-201ENST00000311351 TBX5Q99593 518 aa13.55□□□□□ -0.24
LSM1-201ENST00000311351 RNPEPL1Q9HAU8 725 aa13.55□□□□□ -0.24
LSM1-201ENST00000311351 TRIM36Q9NQ86 728 aa13.55□□□□□ -0.24
LSM1-201ENST00000311351 GPR84Q9NQS5 396 aa13.55□□□□□ -0.24
LSM1-201ENST00000311351 ERVK-18Q9QC07 812 aa13.55□□□□□ -0.24
LSM1-201ENST00000311351 NUFIP1Q9UHK0 495 aaKnown RBP13.55□□□□□ -0.24
LSM1-201ENST00000311351 ZNF391Q9UJN7 358 aa13.55□□□□□ -0.24
LSM1-201ENST00000311351 ZNF816-ZNF321PA0A0X1KG74 233 aa13.54□□□□□ -0.24
LSM1-201ENST00000311351 KIR2DS1A0A191URI9 304 aa13.54□□□□□ -0.24
LSM1-201ENST00000311351 ACOD1A6NK06 481 aa13.54□□□□□ -0.24
LSM1-201ENST00000311351 ZNF670-ZNF695F2Z2N8 137 aa13.54□□□□□ -0.24
LSM1-201ENST00000311351 EI24O14681 340 aa13.54□□□□□ -0.24
LSM1-201ENST00000311351 IGLV3-1P01715 115 aa13.54□□□□□ -0.24
LSM1-201ENST00000311351 TTRP02766 147 aa13.54□□□□□ -0.24
LSM1-201ENST00000311351 FPR2P25090 351 aa13.54□□□□□ -0.24
LSM1-201ENST00000311351 DCTDP32321 178 aa13.54□□□□□ -0.24
LSM1-201ENST00000311351 FGF12P61328 243 aa13.54□□□□□ -0.24
LSM1-201ENST00000311351 CEP78Q5JTW2 689 aa13.54□□□□□ -0.24
LSM1-201ENST00000311351 ZDHHC22Q8N966 263 aa13.54□□□□□ -0.24
LSM1-201ENST00000311351 UPRTQ96BW1 309 aa13.54□□□□□ -0.24
LSM1-201ENST00000311351 RBM4BQ9BQ04 359 aaKnown RBP13.54□□□□□ -0.24
LSM1-201ENST00000311351 CLN6Q9NWW5 311 aa13.54□□□□□ -0.24
LSM1-201ENST00000311351 HAO2Q9NYQ3 351 aa13.54□□□□□ -0.24
LSM1-201ENST00000311351 MRM2Q9UI43 246 aaKnown RBP13.54□□□□□ -0.24
LSM1-201ENST00000311351 SOX21Q9Y651 276 aaPredicted RBP13.54□□□□□ -0.24
LSM1-201ENST00000311351 TMEM210A6NLX4 147 aa13.53□□□□□ -0.24
LSM1-201ENST00000311351 SRRM5B3KS81 715 aa13.53□□□□□ -0.24
LSM1-201ENST00000311351 LOC110117498-PIK3R3F6TDL0 507 aa13.53□□□□□ -0.24
LSM1-201ENST00000311351 TMPRSS2O15393 492 aa13.53□□□□□ -0.24
LSM1-201ENST00000311351 ENSAO43768 121 aaKnown RBP13.53□□□□□ -0.24
LSM1-201ENST00000311351 FAHP16930 419 aa13.53□□□□□ -0.24
LSM1-201ENST00000311351 HTR1FP30939 366 aa13.53□□□□□ -0.24
LSM1-201ENST00000311351 MAP2K3P46734 347 aa13.53□□□□□ -0.24
LSM1-201ENST00000311351 NPY4RP50391 375 aa13.53□□□□□ -0.24
LSM1-201ENST00000311351 GPM6AP51674 278 aa13.53□□□□□ -0.24
LSM1-201ENST00000311351 ACTG1P63261 375 aa13.53□□□□□ -0.24
LSM1-201ENST00000311351 TUSC1Q2TAM9 212 aa13.53□□□□□ -0.24
LSM1-201ENST00000311351 WDR38Q5JTN6 314 aa13.53□□□□□ -0.24
LSM1-201ENST00000311351 ZFP1Q6P2D0 407 aa13.53□□□□□ -0.24
LSM1-201ENST00000311351 FAM216BQ8N7L0 139 aa13.53□□□□□ -0.24
LSM1-201ENST00000311351 SCCPDHQ8NBX0 429 aa13.53□□□□□ -0.24
LSM1-201ENST00000311351 ZFAND2BQ8WV99 257 aa13.53□□□□□ -0.24
LSM1-201ENST00000311351 RNF170Q96K19 258 aa13.53□□□□□ -0.24
LSM1-201ENST00000311351 ZNF48Q96MX3 618 aaPredicted RBP13.53□□□□□ -0.24
LSM1-201ENST00000311351 JMJD8Q96S16 334 aa13.53□□□□□ -0.24
LSM1-201ENST00000311351 MNTQ99583 582 aa13.53□□□□□ -0.24
LSM1-201ENST00000311351 CCL13Q99616 98 aa13.53□□□□□ -0.24
LSM1-201ENST00000311351 WDR13Q9H1Z4 485 aa13.53□□□□□ -0.24
LSM1-201ENST00000311351 ABCB9Q9NP78 766 aa13.53□□□□□ -0.24
LSM1-201ENST00000311351 WARS2Q9UGM6 360 aaKnown RBP13.53□□□□□ -0.24
LSM1-201ENST00000311351 R4GMQ9 66 aa13.53□□□□□ -0.24
LSM1-201ENST00000311351 TRIM77I1YAP6 450 aa13.52□□□□□ -0.25
LSM1-201ENST00000311351 DVL1O14640 695 aa13.52□□□□□ -0.25
LSM1-201ENST00000311351 NDUFA2O43678 99 aa13.52□□□□□ -0.25
LSM1-201ENST00000311351 TFF1P04155 84 aa13.52□□□□□ -0.25
LSM1-201ENST00000311351 ALPLP05186 524 aa13.52□□□□□ -0.25
LSM1-201ENST00000311351 PPIAL4GP0DN37 164 aa13.52□□□□□ -0.25
LSM1-201ENST00000311351 MICBQ29980 383 aa13.52□□□□□ -0.25
LSM1-201ENST00000311351 BCL2L15Q5TBC7 163 aa13.52□□□□□ -0.25
LSM1-201ENST00000311351 OR5T2Q8NGG2 359 aa13.52□□□□□ -0.25
LSM1-201ENST00000311351 OR8J1Q8NGP2 316 aa13.52□□□□□ -0.25
LSM1-201ENST00000311351 ST8SIA4Q92187 359 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms