RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 FN3KRPQ9HA64 309 aa11.23□□□□□ -0.61
VPS28-201ENST00000292510 FGF20Q9NP95 211 aaPredicted RBP11.23□□□□□ -0.61
VPS28-201ENST00000292510 C14orf119Q9NWQ9 140 aa11.23□□□□□ -0.61
VPS28-201ENST00000292510 MPC1Q9Y5U8 109 aa11.23□□□□□ -0.61
VPS28-201ENST00000292510 HSPE1-MOB4S4R3N1 261 aa11.23□□□□□ -0.61
VPS28-201ENST00000292510 V9GYS6 101 aa11.23□□□□□ -0.61
VPS28-201ENST00000292510 C2CD3Q4AC94 2353 aa11.23□□□□□ -0.61
VPS28-201ENST00000292510 NAV3Q8IVL0 2385 aa11.23□□□□□ -0.61
VPS28-201ENST00000292510 A6NLC8 198 aa11.22□□□□□ -0.61
VPS28-201ENST00000292510 A8MV72 311 aaPredicted RBP11.22□□□□□ -0.61
VPS28-201ENST00000292510 E9PI62 339 aa11.22□□□□□ -0.61
VPS28-201ENST00000292510 C3orf80F5H4A9 247 aa11.22□□□□□ -0.61
VPS28-201ENST00000292510 IFNL4K9M1U5 179 aa11.22□□□□□ -0.61
VPS28-201ENST00000292510 SYT7O43581 403 aa11.22□□□□□ -0.61
VPS28-201ENST00000292510 XPNPEP2O43895 674 aa11.22□□□□□ -0.61
VPS28-201ENST00000292510 LMX1BO60663 402 aa11.22□□□□□ -0.61
VPS28-201ENST00000292510 MTRF1O75570 445 aaKnown RBP11.22□□□□□ -0.61
VPS28-201ENST00000292510 HTR1AP08908 422 aa11.22□□□□□ -0.61
VPS28-201ENST00000292510 LIMS3P0CW19 117 aa11.22□□□□□ -0.61
VPS28-201ENST00000292510 LIMS4P0CW20 117 aa11.22□□□□□ -0.61
VPS28-201ENST00000292510 IRF2P14316 349 aa11.22□□□□□ -0.61
VPS28-201ENST00000292510 ATP6V1B1P15313 513 aa11.22□□□□□ -0.61
VPS28-201ENST00000292510 CCL1P22362 96 aa11.22□□□□□ -0.61
VPS28-201ENST00000292510 ETV1P50549 477 aa11.22□□□□□ -0.61
VPS28-201ENST00000292510 ACTA2P62736 377 aa11.22□□□□□ -0.61
VPS28-201ENST00000292510 ACTG2P63267 376 aa11.22□□□□□ -0.61
VPS28-201ENST00000292510 MZT1Q08AG7 82 aa11.22□□□□□ -0.61
VPS28-201ENST00000292510 ZNF154Q13106 437 aa11.22□□□□□ -0.61
VPS28-201ENST00000292510 MOB3CQ70IA8 216 aa11.22□□□□□ -0.61
VPS28-201ENST00000292510 DOK3Q7L591 496 aa11.22□□□□□ -0.61
VPS28-201ENST00000292510 KCTD20Q7Z5Y7 419 aa11.22□□□□□ -0.61
VPS28-201ENST00000292510 LRRC28Q86X40 367 aaPredicted RBP11.22□□□□□ -0.61
VPS28-201ENST00000292510 LINC01356Q8N9X3 169 aa11.22□□□□□ -0.61
VPS28-201ENST00000292510 GGHQ92820 318 aa11.22□□□□□ -0.61
VPS28-201ENST00000292510 C1orf159Q96HA4 380 aa11.22□□□□□ -0.61
VPS28-201ENST00000292510 RNF170Q96K19 258 aa11.22□□□□□ -0.61
VPS28-201ENST00000292510 MICU1Q9BPX6 476 aa11.22□□□□□ -0.61
VPS28-201ENST00000292510 INPP5EQ9NRR6 644 aa11.22□□□□□ -0.61
VPS28-201ENST00000292510 GPR173Q9NS66 373 aa11.22□□□□□ -0.61
VPS28-201ENST00000292510 FRRS1LQ9P0K9 344 aa11.22□□□□□ -0.61
VPS28-201ENST00000292510 RNF7Q9UBF6 113 aa11.22□□□□□ -0.61
VPS28-201ENST00000292510 ENPP5Q9UJA9 477 aa11.22□□□□□ -0.61
VPS28-201ENST00000292510 PPIAL4EA0A075B759 164 aa11.21□□□□□ -0.61
VPS28-201ENST00000292510 A0A1B0GVI7 797 aa11.21□□□□□ -0.61
VPS28-201ENST00000292510 LOC107986453A0A1B0GWG9 222 aa11.21□□□□□ -0.61
VPS28-201ENST00000292510 hCG_1807616A0A1W2PRN6 198 aa11.21□□□□□ -0.61
VPS28-201ENST00000292510 PPIAL4DF5H284 164 aa11.21□□□□□ -0.61
VPS28-201ENST00000292510 PPIAL4FP0DN26 164 aa11.21□□□□□ -0.61
VPS28-201ENST00000292510 EGR1P18146 543 aa11.21□□□□□ -0.61
VPS28-201ENST00000292510 CD80P33681 288 aa11.21□□□□□ -0.61
VPS28-201ENST00000292510 MDH2P40926 338 aaKnown RBP11.21□□□□□ -0.61
VPS28-201ENST00000292510 GPM6AP51674 278 aa11.21□□□□□ -0.61
VPS28-201ENST00000292510 SEC61A1P61619 476 aaKnown RBP11.21□□□□□ -0.61
VPS28-201ENST00000292510 RIPK1Q13546 671 aa11.21□□□□□ -0.61
VPS28-201ENST00000292510 PLCXD3Q63HM9 321 aa11.21□□□□□ -0.61
VPS28-201ENST00000292510 SFRP4Q6FHJ7 346 aaPredicted RBP11.21□□□□□ -0.61
VPS28-201ENST00000292510 FAM166AQ6J272 317 aa11.21□□□□□ -0.61
VPS28-201ENST00000292510 IZUMO2Q6UXV1 221 aa11.21□□□□□ -0.61
VPS28-201ENST00000292510 KCTD8Q6ZWB6 473 aa11.21□□□□□ -0.61
VPS28-201ENST00000292510 KRT74Q7RTS7 529 aa11.21□□□□□ -0.61
VPS28-201ENST00000292510 C1orf87Q8N0U7 546 aa11.21□□□□□ -0.61
VPS28-201ENST00000292510 SYS1Q8N2H4 156 aa11.21□□□□□ -0.61
VPS28-201ENST00000292510 DEFB108BQ8NET1 73 aa11.21□□□□□ -0.61
VPS28-201ENST00000292510 FBLIM1Q8WUP2 373 aa11.21□□□□□ -0.61
VPS28-201ENST00000292510 RPL3LQ92901 407 aaKnown RBP11.21□□□□□ -0.61
VPS28-201ENST00000292510 MRPL48Q96GC5 212 aaKnown RBP11.21□□□□□ -0.61
VPS28-201ENST00000292510 HIST1H2AAQ96QV6 131 aa11.21□□□□□ -0.61
VPS28-201ENST00000292510 RTL8AQ9BWD3 113 aa11.21□□□□□ -0.61
VPS28-201ENST00000292510 JAM3Q9BX67 310 aa11.21□□□□□ -0.61
VPS28-201ENST00000292510 TMEM165Q9HC07 324 aa11.21□□□□□ -0.61
VPS28-201ENST00000292510 PPIAL4AQ9Y536 164 aa11.21□□□□□ -0.61
VPS28-201ENST00000292510 CEACAM18A8MTB9 384 aa11.2□□□□□ -0.62
VPS28-201ENST00000292510 B4DSR2 109 aa11.2□□□□□ -0.62
VPS28-201ENST00000292510 H0YJX3 145 aa11.2□□□□□ -0.62
VPS28-201ENST00000292510 CDIPTO14735 213 aa11.2□□□□□ -0.62
VPS28-201ENST00000292510 NRASP01111 189 aa11.2□□□□□ -0.62
VPS28-201ENST00000292510 UBCP0CG48 685 aaKnown RBP11.2□□□□□ -0.62
VPS28-201ENST00000292510 DCKP27707 260 aa11.2□□□□□ -0.62
VPS28-201ENST00000292510 ALKBH1Q13686 389 aaKnown RBP11.2□□□□□ -0.62
VPS28-201ENST00000292510 CEACAM21Q3KPI0 293 aa11.2□□□□□ -0.62
VPS28-201ENST00000292510 TMEM155Q4W5P6 130 aa11.2□□□□□ -0.62
VPS28-201ENST00000292510 ZBTB37Q5TC79 503 aa11.2□□□□□ -0.62
VPS28-201ENST00000292510 OR2G6Q5TZ20 316 aa11.2□□□□□ -0.62
VPS28-201ENST00000292510 FDX2Q6P4F2 183 aa11.2□□□□□ -0.62
VPS28-201ENST00000292510 WDR82Q6UXN9 313 aa11.2□□□□□ -0.62
VPS28-201ENST00000292510 Q6ZSR3 168 aa11.2□□□□□ -0.62
VPS28-201ENST00000292510 KLHL36Q8N4N3 616 aa11.2□□□□□ -0.62
VPS28-201ENST00000292510 SPICQ8N5J4 248 aa11.2□□□□□ -0.62
VPS28-201ENST00000292510 GCSAMQ8N6F7 178 aa11.2□□□□□ -0.62
VPS28-201ENST00000292510 BPIFB6Q8NFQ5 453 aa11.2□□□□□ -0.62
VPS28-201ENST00000292510 OR10AC1Q8NH08 325 aa11.2□□□□□ -0.62
VPS28-201ENST00000292510 LRRC29Q8WV35 223 aa11.2□□□□□ -0.62
VPS28-201ENST00000292510 RAB39BQ96DA2 213 aa11.2□□□□□ -0.62
VPS28-201ENST00000292510 TMEM80Q96HE8 168 aa11.2□□□□□ -0.62
VPS28-201ENST00000292510 TMEM246Q9BRR3 403 aa11.2□□□□□ -0.62
VPS28-201ENST00000292510 VCX3BQ9H321 246 aa11.2□□□□□ -0.62
VPS28-201ENST00000292510 PATZ1Q9HBE1 687 aaKnown RBP11.2□□□□□ -0.62
VPS28-201ENST00000292510 ABCB9Q9NP78 766 aa11.2□□□□□ -0.62
VPS28-201ENST00000292510 CLEC2DQ9UHP7 191 aa11.2□□□□□ -0.62
VPS28-201ENST00000292510 KCNS2Q9ULS6 477 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms