RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 C1QTNF5Q9BXJ0 243 aa14.26□□□□□ -0.13
USP4-201ENST00000265560 ZNF581Q9P0T4 197 aa14.26□□□□□ -0.13
USP4-201ENST00000265560 GPR160Q9UJ42 338 aa14.26□□□□□ -0.13
USP4-201ENST00000265560 GNB3P16520 340 aa14.26□□□□□ -0.13
USP4-201ENST00000265560 BTCP35070 178 aa14.26□□□□□ -0.13
USP4-201ENST00000265560 NR4A2P43354 598 aa14.26□□□□□ -0.13
USP4-201ENST00000265560 GABRA6Q16445 453 aa14.26□□□□□ -0.13
USP4-201ENST00000265560 TMEM53Q6P2H8 277 aa14.26□□□□□ -0.13
USP4-201ENST00000265560 PLET1Q6UQ28 207 aa14.26□□□□□ -0.13
USP4-201ENST00000265560 OR4D10Q8NGI6 311 aa14.26□□□□□ -0.13
USP4-201ENST00000265560 HPS1Q92902 700 aa14.26□□□□□ -0.13
USP4-201ENST00000265560 C1orf147Q96MC9 270 aaPredicted RBP14.26□□□□□ -0.13
USP4-201ENST00000265560 MRI1Q9BV20 369 aa14.26□□□□□ -0.13
USP4-201ENST00000265560 LDLRAD4O15165 306 aa14.26□□□□□ -0.13
USP4-201ENST00000265560 TMEM225BP0DP42 221 aa14.26□□□□□ -0.13
USP4-201ENST00000265560 THBS4P35443 961 aa14.26□□□□□ -0.13
USP4-201ENST00000265560 TMPRSS3P57727 454 aa14.26□□□□□ -0.13
USP4-201ENST00000265560 FOXRED1Q96CU9 486 aaPredicted RBP14.26□□□□□ -0.13
USP4-201ENST00000265560 SELENOIQ9C0D9 397 aa14.26□□□□□ -0.13
USP4-201ENST00000265560 SOCS1O15524 211 aa14.25□□□□□ -0.13
USP4-201ENST00000265560 NRASP01111 189 aa14.25□□□□□ -0.13
USP4-201ENST00000265560 ERCC1P07992 297 aaPredicted RBP14.25□□□□□ -0.13
USP4-201ENST00000265560 BMP5P22003 454 aa14.25□□□□□ -0.13
USP4-201ENST00000265560 RBMXP38159 391 aaKnown RBP14.25□□□□□ -0.13
USP4-201ENST00000265560 MNDAP41218 407 aa14.25□□□□□ -0.13
USP4-201ENST00000265560 QRFPP83859 136 aa14.25□□□□□ -0.13
USP4-201ENST00000265560 TGFBR3Q03167 851 aa14.25□□□□□ -0.13
USP4-201ENST00000265560 SNTB2Q13425 540 aaKnown RBP14.25□□□□□ -0.13
USP4-201ENST00000265560 PDCD1Q15116 288 aa14.25□□□□□ -0.13
USP4-201ENST00000265560 MZT2BQ6NZ67 158 aa14.25□□□□□ -0.13
USP4-201ENST00000265560 PAPOLGQ9BWT3 736 aaKnown RBP14.25□□□□□ -0.13
USP4-201ENST00000265560 NEK6Q9HC98 313 aa14.25□□□□□ -0.13
USP4-201ENST00000265560 GLRX2Q9NS18 164 aa14.25□□□□□ -0.13
USP4-201ENST00000265560 A0A0A6YYD4 124 aa14.25□□□□□ -0.13
USP4-201ENST00000265560 OR14I1A6ND48 311 aa14.25□□□□□ -0.13
USP4-201ENST00000265560 ALDOBP05062 364 aa14.25□□□□□ -0.13
USP4-201ENST00000265560 PTGFRP43088 359 aa14.25□□□□□ -0.13
USP4-201ENST00000265560 PLCXD3Q63HM9 321 aa14.25□□□□□ -0.13
USP4-201ENST00000265560 GP6Q9HCN6 339 aa14.25□□□□□ -0.13
USP4-201ENST00000265560 TTLL8A6PVC2 850 aa14.24□□□□□ -0.13
USP4-201ENST00000265560 GABARAPH6UMI1 98 aa14.24□□□□□ -0.13
USP4-201ENST00000265560 RAB27BO00194 218 aa14.24□□□□□ -0.13
USP4-201ENST00000265560 CD37P11049 281 aa14.24□□□□□ -0.13
USP4-201ENST00000265560 PCGF3Q3KNV8 242 aa14.24□□□□□ -0.13
USP4-201ENST00000265560 MRPL21Q7Z2W9 205 aaKnown RBP14.24□□□□□ -0.13
USP4-201ENST00000265560 GABRG1Q8N1C3 465 aa14.24□□□□□ -0.13
USP4-201ENST00000265560 NUDCD2Q8WVJ2 157 aa14.24□□□□□ -0.13
USP4-201ENST00000265560 RADILQ96JH8 1075 aa14.24□□□□□ -0.13
USP4-201ENST00000265560 CMTM3Q96MX0 182 aa14.24□□□□□ -0.13
USP4-201ENST00000265560 UQCC2Q9BRT2 126 aa14.24□□□□□ -0.13
USP4-201ENST00000265560 POU2F3Q9UKI9 436 aa14.24□□□□□ -0.13
USP4-201ENST00000265560 PROCRQ9UNN8 238 aa14.24□□□□□ -0.13
USP4-201ENST00000265560 SERPINA5P05154 406 aa14.24□□□□□ -0.13
USP4-201ENST00000265560 KLF9Q13886 244 aaPredicted RBP14.24□□□□□ -0.13
USP4-201ENST00000265560 OR2T2Q6IF00 324 aa14.24□□□□□ -0.13
USP4-201ENST00000265560 PP6455Q8WZ26 134 aa14.24□□□□□ -0.13
USP4-201ENST00000265560 ZNF75AQ96N20 296 aa14.24□□□□□ -0.13
USP4-201ENST00000265560 NUDT15Q9NV35 164 aa14.24□□□□□ -0.13
USP4-201ENST00000265560 FZR1Q9UM11 496 aa14.24□□□□□ -0.13
USP4-201ENST00000265560 FLVCR2Q9UPI3 526 aa14.24□□□□□ -0.13
USP4-201ENST00000265560 LRBAP50851 2863 aa14.24□□□□□ -0.13
USP4-201ENST00000265560 WDR1O75083 606 aa14.24□□□□□ -0.13
USP4-201ENST00000265560 IL2RAP01589 272 aa14.24□□□□□ -0.13
USP4-201ENST00000265560 LINC00303Q3SY05 128 aa14.24□□□□□ -0.13
USP4-201ENST00000265560 GFRALQ6UXV0 394 aa14.24□□□□□ -0.13
USP4-201ENST00000265560 COLCA1Q6ZS62 124 aa14.24□□□□□ -0.13
USP4-201ENST00000265560 GVQW1Q8N7I0 195 aa14.24□□□□□ -0.13
USP4-201ENST00000265560 OR6K3Q8NGY3 331 aa14.24□□□□□ -0.13
USP4-201ENST00000265560 ABCA4P78363 2273 aa14.23□□□□□ -0.13
USP4-201ENST00000265560 CSN2P05814 226 aa14.23□□□□□ -0.13
USP4-201ENST00000265560 GABRA1P14867 456 aa14.23□□□□□ -0.13
USP4-201ENST00000265560 PRSS3P35030 304 aa14.23□□□□□ -0.13
USP4-201ENST00000265560 OR4S1Q8NGB4 309 aa14.23□□□□□ -0.13
USP4-201ENST00000265560 FIGNL2A6NMB9 653 aa14.23□□□□□ -0.13
USP4-201ENST00000265560 CFPP27918 469 aa14.23□□□□□ -0.13
USP4-201ENST00000265560 SNU13P55769 128 aaKnown RBP14.23□□□□□ -0.13
USP4-201ENST00000265560 ALKBH6Q3KRA9 238 aa14.23□□□□□ -0.13
USP4-201ENST00000265560 OR2A2Q6IF42 318 aa14.23□□□□□ -0.13
USP4-201ENST00000265560 BRICD5Q6PL45 260 aa14.23□□□□□ -0.13
USP4-201ENST00000265560 Q6ZTK2 550 aa14.23□□□□□ -0.13
USP4-201ENST00000265560 PNLDC1Q8NA58 520 aaKnown RBP14.23□□□□□ -0.13
USP4-201ENST00000265560 SSC4DQ8WTU2 575 aa14.23□□□□□ -0.13
USP4-201ENST00000265560 APOBEC3DQ96AK3 386 aaPredicted RBP14.23□□□□□ -0.13
USP4-201ENST00000265560 CACNG6Q9BXT2 260 aa14.23□□□□□ -0.13
USP4-201ENST00000265560 LPAR5Q9H1C0 372 aa14.23□□□□□ -0.13
USP4-201ENST00000265560 RAB22AQ9UL26 194 aa14.23□□□□□ -0.13
USP4-201ENST00000265560 CACNA1BQ00975 2339 aa14.22□□□□□ -0.13
USP4-201ENST00000265560 EEF1E1-BLOC1S5C9J1V9 151 aa14.22□□□□□ -0.13
USP4-201ENST00000265560 CDC14BO60729 498 aa14.22□□□□□ -0.13
USP4-201ENST00000265560 BPNT1O95861 308 aa14.22□□□□□ -0.13
USP4-201ENST00000265560 PRF1P14222 555 aa14.22□□□□□ -0.13
USP4-201ENST00000265560 HLA-DMAP28067 261 aa14.22□□□□□ -0.13
USP4-201ENST00000265560 CDNFQ49AH0 187 aa14.22□□□□□ -0.13
USP4-201ENST00000265560 C1orf185Q5T7R7 199 aa14.22□□□□□ -0.13
USP4-201ENST00000265560 ZNF474Q6S9Z5 364 aaPredicted RBP14.22□□□□□ -0.13
USP4-201ENST00000265560 DOLPP1Q86YN1 238 aa14.22□□□□□ -0.13
USP4-201ENST00000265560 CALHM1Q8IU99 346 aa14.22□□□□□ -0.13
USP4-201ENST00000265560 BEST4Q8NFU0 473 aa14.22□□□□□ -0.13
USP4-201ENST00000265560 BORCS8Q96FH0 119 aa14.22□□□□□ -0.13
USP4-201ENST00000265560 S100A13Q99584 98 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms