RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 BCHEP06276 602 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 ANKRD16Q6P6B7 361 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 SLC22A15Q8IZD6 547 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 PLPPR1Q8TBJ4 325 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 XAGE5Q8WWM1 108 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 PHF7Q9BWX1 381 aaPredicted RBP3.2□□□□□ -1.9
SCN1A-221ENST00000641996 MAP1LC3CQ9BXW4 147 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 TNFRSF18Q9Y5U5 241 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 A0A1W2PRS3 328 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 KIR2DS3K7RE56 304 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 SGK494L7N484 410 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 TDGF1P13385 188 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 EGR1P18146 543 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 CRHBPP24387 322 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 ADORA2BP29275 332 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 RPL13AP40429 203 aaKnown RBP3.2□□□□□ -1.9
SCN1A-221ENST00000641996 CDX1P47902 265 aaPredicted RBP3.2□□□□□ -1.9
SCN1A-221ENST00000641996 MALLQ13021 153 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 KIR2DS3Q14952 304 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 GDF7Q7Z4P5 450 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 TMEM151AQ8N4L1 468 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 OR4D9Q8NGE8 314 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 OR1K1Q8NGR3 316 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 NUBPLQ8TB37 319 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 WNT2BQ93097 391 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 ACOX2Q99424 681 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 ELL3Q9HB65 397 aaPredicted RBP3.2□□□□□ -1.9
SCN1A-221ENST00000641996 SLC45A2Q9UMX9 530 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 NIP7Q9Y221 180 aaKnown RBP eCLIP3.2□□□□□ -1.9
SCN1A-221ENST00000641996 POMPQ9Y244 141 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 TOP2AP11388 1531 aaKnown RBP3.2□□□□□ -1.9
SCN1A-221ENST00000641996 TCRBV7S3A2A0A539 114 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 TBL1XO60907 577 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 RPL35AP18077 110 aaKnown RBP3.2□□□□□ -1.9
SCN1A-221ENST00000641996 MEOX1P50221 254 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 OAZ1P54368 228 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 FKBP1BP68106 108 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 ZNF730Q6ZMV8 503 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 ZNF572Q7Z3I7 529 aaPredicted RBP3.2□□□□□ -1.9
SCN1A-221ENST00000641996 MRPL38Q96DV4 380 aaKnown RBP3.2□□□□□ -1.9
SCN1A-221ENST00000641996 MRPL53Q96EL3 112 aaKnown RBP3.2□□□□□ -1.9
SCN1A-221ENST00000641996 KCNMB3Q9NPA1 279 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 HEBP1Q9NRV9 189 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 PRODH2Q9UF12 536 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 PSG8Q9UQ74 426 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 FCF1Q9Y324 198 aaKnown RBP3.2□□□□□ -1.9
SCN1A-221ENST00000641996 PPIAL4AQ9Y536 164 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 KCNMB2Q9Y691 235 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 SPATA31A6Q5VVP1 1343 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 LSM8O95777 96 aaKnown RBP3.2□□□□□ -1.9
SCN1A-221ENST00000641996 CD79AP11912 226 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 ACRV1P26436 265 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 RBMXP38159 391 aaKnown RBP3.2□□□□□ -1.9
SCN1A-221ENST00000641996 CT55Q8WUE5 264 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 RAB37Q96AX2 223 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 PEBP4Q96S96 227 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 MYADMQ96S97 322 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 NEU3Q9UQ49 428 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 IGSF9BQ9UPX0 1349 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 SCAF11Q99590 1463 aaKnown RBP3.2□□□□□ -1.9
SCN1A-221ENST00000641996 NAP1L6A6NFF2 107 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 B4DEV8 164 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 ADRA2AP08913 450 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 ARSBP15848 533 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 OPRD1P41143 372 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 GDF5P43026 501 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 CTSOP43234 321 aaPredicted RBP3.2□□□□□ -1.9
SCN1A-221ENST00000641996 EVX1P49640 407 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 RAB38P57729 211 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 DYNLT1P63172 113 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 EMX1Q04741 257 aaPredicted RBP3.2□□□□□ -1.9
SCN1A-221ENST00000641996 TMEM69Q5SWH9 247 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 RPTNQ6XPR3 784 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 STPG2Q8N412 459 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 TEX26Q8N6G2 289 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 FER1L6-AS1Q8NA97 138 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 ZNF564Q8TBZ8 553 aaPredicted RBP3.2□□□□□ -1.9
SCN1A-221ENST00000641996 PNPLA2Q96AD5 504 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 TMEM19Q96HH6 336 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 TBL1YQ9BQ87 522 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 TLE6Q9H808 572 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 MRPS18CQ9Y3D5 142 aaKnown RBP3.2□□□□□ -1.9
SCN1A-221ENST00000641996 C21orf140B9A014 251 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 GNG4P50150 75 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 SLAMF1Q13291 335 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 OR10G6Q8NH81 332 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 TRMT61AQ96FX7 289 aaKnown RBP3.2□□□□□ -1.9
SCN1A-221ENST00000641996 ATXN7L3BQ96GX2 97 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 PRDM13Q9H4Q3 707 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 GJD2Q9UKL4 321 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 SPATA31A3Q5VYP0 1347 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 ATP10AO60312 1499 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 ZNF878C9JN71 531 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 H3BVH4 76 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 K7EP13 123 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 HRO43593 1189 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 H2AFZP0C0S5 128 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 ACVR1Q04771 509 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 RPL22L1Q6P5R6 122 aaKnown RBP3.19□□□□□ -1.9
SCN1A-221ENST00000641996 H2AFVQ71UI9 128 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms