RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 FAHP16930 419 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 ARRB2P32121 409 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 KIR2DS4P43632 304 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 GABRA4P48169 554 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 KIR2DS1Q14954 304 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 SYPL1Q16563 259 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 DUSP7Q16829 419 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 ZNF674Q2M3X9 581 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 EMC4Q5J8M3 183 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 ZNF439Q8NDP4 499 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 FAM71CQ8NEG0 241 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 OR9I1Q8NGQ6 314 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 OR56B4Q8NH76 319 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 OR10J5Q8NHC4 309 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 RPS4Y2Q8TD47 263 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 ZG16BQ96DA0 208 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 LURAP1Q96LR2 239 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 GPR137Q96N19 417 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 LRRC3BQ96PB8 259 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 TNFRSF13CQ96RJ3 184 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 OR52D1Q9H346 318 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 EMC7Q9NPA0 242 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 RNF7Q9UBF6 113 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 PILRAQ9UKJ1 303 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 CDK1P06493 297 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 CR2P20023 1033 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 MAGEB1P43366 347 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 B4GALNT1Q00973 533 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 AQP6Q13520 282 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 TMEM97Q5BJF2 176 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 COQ5Q5HYK3 327 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 PHYHD1Q5SRE7 291 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 TMEM150AQ86TG1 271 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 LINC00346Q8IVM7 164 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 SLC37A3Q8NCC5 494 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 SIMC1Q8NDZ2 872 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 ASB13Q8WXK3 278 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 LGALS12Q96DT0 336 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 SMIM12Q96EX1 92 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 NIPSNAP3BQ9BS92 247 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 CACNG2Q9Y698 323 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 PARP14Q460N5 1801 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 SYT5O00445 386 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 CTXN2P0C2S0 81 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 IGFBP6P24592 240 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-218ENST00000640036 LCN6P62502 163 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 UBE2IP63279 158 aaKnown RBP4.49□□□□□ -1.69
SCN1A-218ENST00000640036 AKR1C1Q04828 323 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 TCF15Q12870 199 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 ZNF791Q3KP31 576 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-218ENST00000640036 DBX2Q6ZNG2 339 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 LHFPL2Q6ZUX7 228 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 TSEN54Q7Z6J9 526 aaKnown RBP4.49□□□□□ -1.69
SCN1A-218ENST00000640036 PHC2Q8IXK0 858 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 OR2M3Q8NG83 312 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 TRUB1Q8WWH5 349 aaKnown RBP4.49□□□□□ -1.69
SCN1A-218ENST00000640036 MED12Q93074 2177 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 ZNF99A8MXY4 864 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-218ENST00000640036 PYCARD-AS1I3L0S3 204 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 TRAF3IP2O43734 574 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-218ENST00000640036 METAP1DQ6UB28 335 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-218ENST00000640036 KCTD9Q7L273 389 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 DOK3Q7L591 496 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 CPOQ8IVL8 374 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 RDH5Q92781 318 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 DDOQ99489 341 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 FAM60AQ9NP50 221 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 RPS10-NUDT3A0A1W2PQS6 291 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 DNPH1O43598 174 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 RELAQ04206 551 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 HNF4GQ14541 408 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 CBR4Q8N4T8 237 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 NEURL3Q96EH8 262 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 CHIAQ9BZP6 476 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 METTL17Q9H7H0 456 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-218ENST00000640036 SEBOXQ9HB31 216 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-218ENST00000640036 MOB4Q9Y3A3 225 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 HSPE1-MOB4S4R3N1 261 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 A0A1W2PQM1 296 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 SPINT1O43278 529 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 CSF1P09603 554 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 LAP3P28838 519 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 CXCR4P61073 352 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 RHOBP62745 196 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 HOXC5Q00444 222 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 ZNF266Q14584 549 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 PDCD1Q15116 288 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 CTU2Q2VPK5 515 aaKnown RBP4.49□□□□□ -1.69
SCN1A-218ENST00000640036 Q56UQ5 140 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 STEAP1BQ6NZ63 245 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 DCXRQ7Z4W1 244 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 SNRNP40Q96DI7 357 aaKnown RBP4.49□□□□□ -1.69
SCN1A-218ENST00000640036 ABHD6Q9BV23 337 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 SELENOIQ9C0D9 397 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 ZDHHC8Q9ULC8 765 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 FREM1Q5H8C1 2179 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 NOTOA8MTQ0 251 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 LMX1BO60663 402 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 ARSBP15848 533 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 OR3A4PP47883 348 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms