RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 SLC25A21Q9BQT8 299 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-217ENST00000637988 TCEAL7Q9BRU2 100 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 MKRN2Q9H000 416 aaKnown RBP5.53□□□□□ -1.52
SCN1A-217ENST00000637988 TXNIPQ9H3M7 391 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 SMOC1Q9H4F8 434 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 GPR84Q9NQS5 396 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 RYDENQ9NUL5 291 aaKnown RBP5.53□□□□□ -1.52
SCN1A-217ENST00000637988 NTNG1Q9Y2I2 539 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 TMEM200CA6NKL6 621 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 ALG1L2C9J202 215 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 FTH1P19P0C7X4 201 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 AKR1C3P42330 323 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 GPR6P46095 362 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-217ENST00000637988 DIO1P49895 249 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 CXorf67Q86X51 503 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-217ENST00000637988 CA13Q8N1Q1 262 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 PATE1Q8WXA2 126 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 LINC01599Q8WXQ3 324 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 EID2BQ96D98 161 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 OR2M2Q96R28 347 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 CHST6Q9GZX3 395 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 C19orf53Q9UNZ5 99 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-217ENST00000637988 FANCMQ8IYD8 2048 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 IFNL4K9M1U5 179 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 TAGLN2P37802 199 aaKnown RBP5.53□□□□□ -1.52
SCN1A-217ENST00000637988 PTTG1IPP53801 180 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 HTR4Q13639 388 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 EXOSC2Q13868 293 aaKnown RBP5.53□□□□□ -1.52
SCN1A-217ENST00000637988 ADIRFQ15847 76 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 SPINK14Q6IE38 97 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 MS4A6EQ96DS6 147 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 SLC39A13Q96H72 371 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 ZNF778Q96MU6 729 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 TUBB1Q9H4B7 451 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 ST3GAL6Q9Y274 331 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 FLVCR1Q9Y5Y0 555 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 TCF20Q9UGU0 1960 aaKnown RBP5.53□□□□□ -1.52
SCN1A-217ENST00000637988 TRBV4-1A0A0J9YWV2 114 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 FAM157AC9JC47 383 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 SLC25A17O43808 307 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 LANCL1O43813 399 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 IL5P05113 134 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 KCNJ3P48549 501 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 FAM209AQ5JX71 171 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 LACC1Q8IV20 430 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 PLPP7Q8NBV4 271 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 TMEM255BQ8WV15 326 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 ALKBH3Q96Q83 286 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-217ENST00000637988 PCGF1Q9BSM1 259 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 DUSP15Q9H1R2 295 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-217ENST00000637988 LPAR2Q9HBW0 351 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 IGHV1OR15-9A0A0B4J2B8 117 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 A0A0U1RQS6 177 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 SERPINE3A8MV23 424 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 XRCC3O43542 346 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 CDK5Q00535 292 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 ZNF816Q0VGE8 651 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-217ENST00000637988 GGNBP1Q5YKI7 109 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 Q6ZS52 159 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 OR1L4Q8NGR5 311 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 ADTRPQ96IZ2 230 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 TEX101Q9BY14 249 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 PPIL3Q9H2H8 161 aaKnown RBP5.53□□□□□ -1.52
SCN1A-217ENST00000637988 MED9Q9NWA0 146 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 INSIG2Q9Y5U4 225 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 TRABD2BA6NFA1 517 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 A6NIN4 97 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 KRBOX1C9JBD0 128 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 WNT9BO14905 357 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 DUS4LO95620 317 aaKnown RBP5.52□□□□□ -1.53
SCN1A-217ENST00000637988 ARIH2OSQ8N7S6 290 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 C16orf52Q8NHV5 167 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 OR51E1Q8TCB6 317 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 OR4C12Q96R67 309 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 ZIC5Q96T25 663 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 FOXB1Q99853 325 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 PRDM14Q9GZV8 571 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 RABAC1Q9UI14 185 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 V9GYS6 101 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 SCN7AQ01118 1682 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 ABCA3Q99758 1704 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 PRSS37A4D1T9 235 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 PNLIPP16233 465 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 CCR9P51686 369 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 TPPP2P59282 170 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 ERVFRD-1P60508 538 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 DUSP8Q13202 625 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 HYAL4Q2M3T9 481 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 ZC3H3Q8IXZ2 948 aaKnown RBP5.52□□□□□ -1.53
SCN1A-217ENST00000637988 PFN4Q8NHR9 129 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 ZNF384Q8TF68 577 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 ZNF416Q9BWM5 594 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 A0A1W2PS18 150 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 SELENOFO60613 162 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 AQP8O94778 261 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 PTTG1O95997 202 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 RAF1P04049 648 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 NUDT7P0C024 238 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 TRAPPC2P0DI81 140 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 TRAPPC2BP0DI82 140 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms