RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 NAA40Q86UY6 237 aa8.42□□□□□ -1.06
CLN3-261ENST00000637686 OR5AK2Q8NH90 309 aa8.42□□□□□ -1.06
CLN3-261ENST00000637686 NEU4Q8WWR8 484 aaPredicted RBP8.42□□□□□ -1.06
CLN3-261ENST00000637686 GTF3AQ92664 365 aaKnown RBP8.42□□□□□ -1.06
CLN3-261ENST00000637686 GHSRQ92847 366 aa8.42□□□□□ -1.06
CLN3-261ENST00000637686 DGCR14Q96DF8 476 aaKnown RBP8.42□□□□□ -1.06
CLN3-261ENST00000637686 C1QTNF5Q9BXJ0 243 aa8.42□□□□□ -1.06
CLN3-261ENST00000637686 OPA3Q9H6K4 179 aa8.42□□□□□ -1.06
CLN3-261ENST00000637686 FRRS1LQ9P0K9 344 aa8.42□□□□□ -1.06
CLN3-261ENST00000637686 GPR160Q9UJ42 338 aa8.42□□□□□ -1.06
CLN3-261ENST00000637686 OR52A1Q9UKL2 312 aa8.42□□□□□ -1.06
CLN3-261ENST00000637686 TRBV5-5A0A0J9YX44 114 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 LOC390937A0A1W2PQ73 354 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 RNF223E7ERA6 249 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 H3BSA7 217 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 PSMD9O00233 223 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 AIREO43918 545 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 RGS9O75916 674 aaPredicted RBP8.41□□□□□ -1.06
CLN3-261ENST00000637686 RPP14O95059 124 aaKnown RBP8.41□□□□□ -1.06
CLN3-261ENST00000637686 ZFPL1O95159 310 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 PNPP00491 289 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 INHBBP09529 407 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 DAOP14920 347 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 FOSL1P15407 271 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 MAPK3P27361 379 aaPredicted RBP8.41□□□□□ -1.06
CLN3-261ENST00000637686 CRYBB2P43320 205 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 MAGEB1P43366 347 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 KIR3DL2P43630 455 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 PDLIM4P50479 330 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 GTF2A1P52655 376 aaPredicted RBP8.41□□□□□ -1.06
CLN3-261ENST00000637686 ZNF121P58317 390 aaPredicted RBP8.41□□□□□ -1.06
CLN3-261ENST00000637686 DSCR9P59020 149 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 PSG7Q13046 419 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 CARTPTQ16568 116 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 CTF1Q16619 201 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 MOGQ16653 247 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 WDR38Q5JTN6 314 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 UNQ9370/PRO34162Q6UXP9 181 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 SLC16A12Q6ZSM3 486 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 SPATC1Q76KD6 591 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 CLVS1Q8IUQ0 354 aaPredicted RBP8.41□□□□□ -1.06
CLN3-261ENST00000637686 PRSS35Q8N3Z0 413 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 ZNF283Q8N7M2 679 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 MAPK1IP1LQ8NDC0 245 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 OR5L1Q8NGL2 311 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 GPR148Q8TDV2 347 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 C10orf105Q8TEF2 133 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 FAM168AQ92567 244 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 APOBEC3DQ96AK3 386 aaPredicted RBP8.41□□□□□ -1.06
CLN3-261ENST00000637686 C10orf35Q96D05 121 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 CMBLQ96DG6 245 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 C18orf12Q96KH6 178 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 COX4I2Q96KJ9 171 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 SMR3AQ99954 134 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 REG4Q9BYZ8 158 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 TTTY10Q9BZA0 68 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 PBOV1Q9GZY1 135 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 OR10A2Q9H208 303 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 GSX1Q9H4S2 264 aaPredicted RBP8.41□□□□□ -1.06
CLN3-261ENST00000637686 PTTG3PQ9NZH4 202 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 RSL24D1Q9UHA3 163 aaKnown RBP8.41□□□□□ -1.06
CLN3-261ENST00000637686 HHLA2Q9UM44 414 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 SSR3Q9UNL2 185 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 GSTK1Q9Y2Q3 226 aa8.41□□□□□ -1.06
CLN3-261ENST00000637686 SIRT4Q9Y6E7 314 aaPredicted RBP8.41□□□□□ -1.06
CLN3-261ENST00000637686 C17orf100A8MU93 164 aa8.4□□□□□ -1.06
CLN3-261ENST00000637686 LYNX1G3V0Z9 82 aa8.4□□□□□ -1.06
CLN3-261ENST00000637686 MAGEB4O15481 346 aaPredicted RBP8.4□□□□□ -1.06
CLN3-261ENST00000637686 XRCC2O43543 280 aa8.4□□□□□ -1.06
CLN3-261ENST00000637686 SPRY3O43610 288 aa8.4□□□□□ -1.06
CLN3-261ENST00000637686 TIMM8AO60220 97 aaPredicted RBP8.4□□□□□ -1.06
CLN3-261ENST00000637686 TMEM127O75204 238 aa8.4□□□□□ -1.06
CLN3-261ENST00000637686 ARL6IP5O75915 188 aa8.4□□□□□ -1.06
CLN3-261ENST00000637686 TTRP02766 147 aa8.4□□□□□ -1.06
CLN3-261ENST00000637686 HPXP02790 462 aa8.4□□□□□ -1.06
CLN3-261ENST00000637686 LCATP04180 440 aa8.4□□□□□ -1.06
CLN3-261ENST00000637686 CSF3P09919 207 aa8.4□□□□□ -1.06
CLN3-261ENST00000637686 LYNX1P0DP58 116 aa8.4□□□□□ -1.06
CLN3-261ENST00000637686 PSMB10P40306 273 aa8.4□□□□□ -1.06
CLN3-261ENST00000637686 ZNF81P51508 661 aa8.4□□□□□ -1.06
CLN3-261ENST00000637686 PRKXP51817 358 aa8.4□□□□□ -1.06
CLN3-261ENST00000637686 RPS11P62280 158 aaKnown RBP eCLIP8.4□□□□□ -1.06
CLN3-261ENST00000637686 MFGE8Q08431 387 aaPredicted RBP8.4□□□□□ -1.06
CLN3-261ENST00000637686 HLXQ14774 488 aaPredicted RBP8.4□□□□□ -1.06
CLN3-261ENST00000637686 Q499Y3 187 aa8.4□□□□□ -1.06
CLN3-261ENST00000637686 ZBTB37Q5TC79 503 aa8.4□□□□□ -1.06
CLN3-261ENST00000637686 GPR107Q5VW38 600 aa8.4□□□□□ -1.06
CLN3-261ENST00000637686 KRT74Q7RTS7 529 aa8.4□□□□□ -1.06
CLN3-261ENST00000637686 ZNF676Q8N7Q3 588 aa8.4□□□□□ -1.06
CLN3-261ENST00000637686 PLPP7Q8NBV4 271 aa8.4□□□□□ -1.06
CLN3-261ENST00000637686 UBASH3BQ8TF42 649 aa8.4□□□□□ -1.06
CLN3-261ENST00000637686 SPSB4Q96A44 273 aa8.4□□□□□ -1.06
CLN3-261ENST00000637686 ISOC1Q96CN7 298 aa8.4□□□□□ -1.06
CLN3-261ENST00000637686 HAVCR1Q96D42 359 aa8.4□□□□□ -1.06
CLN3-261ENST00000637686 MYOZ1Q9NP98 299 aaPredicted RBP8.4□□□□□ -1.06
CLN3-261ENST00000637686 PURGQ9UJV8 347 aaKnown RBP8.4□□□□□ -1.06
CLN3-261ENST00000637686 SLC22A13Q9Y226 551 aa8.4□□□□□ -1.06
CLN3-261ENST00000637686 TRAV1-2A0A0B4J238 106 aa8.39□□□□□ -1.07
CLN3-261ENST00000637686 PLSCR5A0PG75 271 aa8.39□□□□□ -1.07
CLN3-261ENST00000637686 ZSCAN5BA6NJL1 495 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms