RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 A0A0U1RQV5 110 aa15.07■□□□□ 0
CLN3-247ENST00000636351 F5H5P2 479 aa15.07■□□□□ 0
CLN3-247ENST00000636351 H0YL77 283 aa15.07■□□□□ 0
CLN3-247ENST00000636351 J3QLW9 94 aa15.07■□□□□ 0
CLN3-247ENST00000636351 SRSF10O75494 262 aaKnown RBP15.07■□□□□ 0
CLN3-247ENST00000636351 ZNF19P17023 458 aa15.07■□□□□ 0
CLN3-247ENST00000636351 MYL12AP19105 171 aa15.07■□□□□ 0
CLN3-247ENST00000636351 TNFRSF1AP19438 455 aa15.07■□□□□ 0
CLN3-247ENST00000636351 ACHEP22303 614 aa15.07■□□□□ 0
CLN3-247ENST00000636351 GNALP38405 381 aa15.07■□□□□ 0
CLN3-247ENST00000636351 SRP9P49458 86 aaKnown RBP15.07■□□□□ 0
CLN3-247ENST00000636351 MRPS11P82912 194 aaKnown RBP15.07■□□□□ 0
CLN3-247ENST00000636351 GALEQ14376 348 aa15.07■□□□□ 0
CLN3-247ENST00000636351 ODF4Q2M2E3 257 aa15.07■□□□□ 0
CLN3-247ENST00000636351 CDONQ4KMG0 1287 aa15.07■□□□□ 0
CLN3-247ENST00000636351 ZNF684Q5T5D7 378 aa15.07■□□□□ 0
CLN3-247ENST00000636351 FTMTQ8N4E7 242 aa15.07■□□□□ 0
CLN3-247ENST00000636351 CSNK2A3Q8NEV1 391 aa15.07■□□□□ 0
CLN3-247ENST00000636351 BPIFB6Q8NFQ5 453 aa15.07■□□□□ 0
CLN3-247ENST00000636351 DVL3Q92997 716 aaPredicted RBP15.07■□□□□ 0
CLN3-247ENST00000636351 GPR84Q9NQS5 396 aa15.07■□□□□ 0
CLN3-247ENST00000636351 ZNF275Q9NSD4 429 aaPredicted RBP15.07■□□□□ 0
CLN3-247ENST00000636351 MRPS18AQ9NVS2 196 aaKnown RBP15.07■□□□□ 0
CLN3-247ENST00000636351 IL19Q9UHD0 177 aa15.07■□□□□ 0
CLN3-247ENST00000636351 SLC22A13Q9Y226 551 aa15.07■□□□□ 0
CLN3-247ENST00000636351 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP15.06■□□□□ 0
CLN3-247ENST00000636351 LRP5LA4QPB2 252 aa15.06■□□□□ 0
CLN3-247ENST00000636351 EFCAB10A6NFE3 127 aa15.06■□□□□ 0
CLN3-247ENST00000636351 MLNRO43193 412 aa15.06■□□□□ 0
CLN3-247ENST00000636351 PPIHO43447 177 aaKnown RBP15.06■□□□□ 0
CLN3-247ENST00000636351 TTRP02766 147 aa15.06■□□□□ 0
CLN3-247ENST00000636351 COL8A2P25067 703 aa15.06■□□□□ 0
CLN3-247ENST00000636351 OR12D2P58182 307 aa15.06■□□□□ 0
CLN3-247ENST00000636351 MED21Q13503 144 aa15.06■□□□□ 0
CLN3-247ENST00000636351 SNCBQ16143 134 aa15.06■□□□□ 0
CLN3-247ENST00000636351 CR1LQ2VPA4 569 aa15.06■□□□□ 0
CLN3-247ENST00000636351 HFEQ30201 348 aa15.06■□□□□ 0
CLN3-247ENST00000636351 KCTD20Q7Z5Y7 419 aa15.06■□□□□ 0
CLN3-247ENST00000636351 ZNF540Q8NDQ6 660 aa15.06■□□□□ 0
CLN3-247ENST00000636351 CCL17Q92583 94 aa15.06■□□□□ 0
CLN3-247ENST00000636351 RORBQ92753 470 aa15.06■□□□□ 0
CLN3-247ENST00000636351 PPP1R14AQ96A00 147 aa15.06■□□□□ 0
CLN3-247ENST00000636351 MEGF10Q96KG7 1140 aa15.06■□□□□ 0
CLN3-247ENST00000636351 G6PC2Q9NQR9 355 aa15.06■□□□□ 0
CLN3-247ENST00000636351 ERVK13-1Q9NX77 482 aa15.06■□□□□ 0
CLN3-247ENST00000636351 CACNG2Q9Y698 323 aa15.06■□□□□ 0
CLN3-247ENST00000636351 P2RY10O00398 339 aa15.05■□□□□ -0
CLN3-247ENST00000636351 XPNPEP2O43895 674 aa15.05■□□□□ -0
CLN3-247ENST00000636351 HTR1AP08908 422 aa15.05■□□□□ -0
CLN3-247ENST00000636351 DCKP27707 260 aa15.05■□□□□ -0
CLN3-247ENST00000636351 CRYBB2P43320 205 aa15.05■□□□□ -0
CLN3-247ENST00000636351 GPR6P46095 362 aaPredicted RBP15.05■□□□□ -0
CLN3-247ENST00000636351 OR8B8Q15620 311 aa15.05■□□□□ -0
CLN3-247ENST00000636351 SPRNQ5BIV9 151 aa15.05■□□□□ -0
CLN3-247ENST00000636351 WDR38Q5JTN6 314 aa15.05■□□□□ -0
CLN3-247ENST00000636351 CATSPERDQ86XM0 798 aa15.05■□□□□ -0
CLN3-247ENST00000636351 ELMOD2Q8IZ81 293 aa15.05■□□□□ -0
CLN3-247ENST00000636351 OR8S1Q8NH09 359 aa15.05■□□□□ -0
CLN3-247ENST00000636351 FBLIM1Q8WUP2 373 aa15.05■□□□□ -0
CLN3-247ENST00000636351 FGF20Q9NP95 211 aaPredicted RBP15.05■□□□□ -0
CLN3-247ENST00000636351 CHCHD3Q9NX63 227 aaKnown RBP15.05■□□□□ -0
CLN3-247ENST00000636351 PPP1R3CQ9UQK1 317 aa15.05■□□□□ -0
CLN3-247ENST00000636351 EXOSC1Q9Y3B2 195 aaKnown RBP15.05■□□□□ -0
CLN3-247ENST00000636351 A0A1B0GVI7 797 aa15.04■□□□□ -0
CLN3-247ENST00000636351 CLDN25C9JDP6 229 aa15.04■□□□□ -0
CLN3-247ENST00000636351 H3BSH0 61 aa15.04■□□□□ -0
CLN3-247ENST00000636351 GMDSO60547 372 aa15.04■□□□□ -0
CLN3-247ENST00000636351 MTRF1O75570 445 aaKnown RBP15.04■□□□□ -0
CLN3-247ENST00000636351 RP2O75695 350 aa15.04■□□□□ -0
CLN3-247ENST00000636351 ACKR3P25106 362 aa15.04■□□□□ -0
CLN3-247ENST00000636351 MAP2K3P46734 347 aa15.04■□□□□ -0
CLN3-247ENST00000636351 AHSA2Q719I0 299 aa15.04■□□□□ -0
CLN3-247ENST00000636351 SYS1Q8N2H4 156 aa15.04■□□□□ -0
CLN3-247ENST00000636351 STX19Q8N4C7 294 aa15.04■□□□□ -0
CLN3-247ENST00000636351 SEMA6DQ8NFY4 1073 aa15.04■□□□□ -0
CLN3-247ENST00000636351 PELI1Q96FA3 418 aa15.04■□□□□ -0
CLN3-247ENST00000636351 TIMD4Q96H15 378 aa15.04■□□□□ -0
CLN3-247ENST00000636351 TMEM80Q96HE8 168 aa15.04■□□□□ -0
CLN3-247ENST00000636351 ANKRD60Q9BZ19 345 aa15.04■□□□□ -0
CLN3-247ENST00000636351 DIMT1Q9UNQ2 313 aaKnown RBP15.04■□□□□ -0
CLN3-247ENST00000636351 RHBDD3Q9Y3P4 386 aa15.04■□□□□ -0
CLN3-247ENST00000636351 ZNF816-ZNF321PA0A0X1KG74 233 aa15.03■□□□□ -0
CLN3-247ENST00000636351 ANXA2P2A6NMY6 339 aa15.03■□□□□ -0
CLN3-247ENST00000636351 DHRS3O75911 302 aa15.03■□□□□ -0
CLN3-247ENST00000636351 UBCP0CG48 685 aaKnown RBP15.03■□□□□ -0
CLN3-247ENST00000636351 ATP6V1B1P15313 513 aa15.03■□□□□ -0
CLN3-247ENST00000636351 MYF6P23409 242 aa15.03■□□□□ -0
CLN3-247ENST00000636351 GIFP27352 417 aa15.03■□□□□ -0
CLN3-247ENST00000636351 IL2RGP31785 369 aa15.03■□□□□ -0
CLN3-247ENST00000636351 ETV1P50549 477 aa15.03■□□□□ -0
CLN3-247ENST00000636351 GBX2P52951 348 aaPredicted RBP15.03■□□□□ -0
CLN3-247ENST00000636351 SLC3A1Q07837 685 aa15.03■□□□□ -0
CLN3-247ENST00000636351 MZT1Q08AG7 82 aa15.03■□□□□ -0
CLN3-247ENST00000636351 RIN1Q13671 783 aa15.03■□□□□ -0
CLN3-247ENST00000636351 AVPI1Q5T686 147 aa15.03■□□□□ -0
CLN3-247ENST00000636351 LAIR2Q6ISS4 152 aa15.03■□□□□ -0
CLN3-247ENST00000636351 TMPRSS11AQ6ZMR5 421 aa15.03■□□□□ -0
CLN3-247ENST00000636351 MOGAT3Q86VF5 341 aa15.03■□□□□ -0
CLN3-247ENST00000636351 KLBQ86Z14 1044 aa15.03■□□□□ -0
CLN3-247ENST00000636351 KLHL36Q8N4N3 616 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms