RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 PSORS1C1Q9UIG5 152 aa14□□□□□ -0.17
CCDC28A-202ENST00000611852 TANC2Q9HCD6 1990 aa14□□□□□ -0.17
CCDC28A-202ENST00000611852 DYSFO75923 2080 aa13.99□□□□□ -0.17
CCDC28A-202ENST00000611852 EFCAB10A6NFE3 127 aa13.99□□□□□ -0.17
CCDC28A-202ENST00000611852 P2RY10O00398 339 aa13.99□□□□□ -0.17
CCDC28A-202ENST00000611852 SMAD7O15105 426 aaKnown RBP13.99□□□□□ -0.17
CCDC28A-202ENST00000611852 DHRS3O75911 302 aa13.99□□□□□ -0.17
CCDC28A-202ENST00000611852 INHBBP09529 407 aa13.99□□□□□ -0.17
CCDC28A-202ENST00000611852 CCL1P22362 96 aa13.99□□□□□ -0.17
CCDC28A-202ENST00000611852 KIR3DL2P43630 455 aa13.99□□□□□ -0.17
CCDC28A-202ENST00000611852 GATA4P43694 442 aa13.99□□□□□ -0.17
CCDC28A-202ENST00000611852 ETV1P50549 477 aa13.99□□□□□ -0.17
CCDC28A-202ENST00000611852 NANOS3P60323 173 aaKnown RBP13.99□□□□□ -0.17
CCDC28A-202ENST00000611852 MVKQ03426 396 aa13.99□□□□□ -0.17
CCDC28A-202ENST00000611852 ST3GAL4Q11206 333 aa13.99□□□□□ -0.17
CCDC28A-202ENST00000611852 HNRNPA0Q13151 305 aaKnown RBP13.99□□□□□ -0.17
CCDC28A-202ENST00000611852 ODF4Q2M2E3 257 aa13.99□□□□□ -0.17
CCDC28A-202ENST00000611852 KRT74Q7RTS7 529 aa13.99□□□□□ -0.17
CCDC28A-202ENST00000611852 MAPK1IP1LQ8NDC0 245 aa13.99□□□□□ -0.17
CCDC28A-202ENST00000611852 CNBD2Q96M20 576 aa13.99□□□□□ -0.17
CCDC28A-202ENST00000611852 PAPOLGQ9BWT3 736 aaKnown RBP13.99□□□□□ -0.17
CCDC28A-202ENST00000611852 PPP1R3EQ9H7J1 279 aa13.99□□□□□ -0.17
CCDC28A-202ENST00000611852 GCM1Q9NP62 436 aa13.99□□□□□ -0.17
CCDC28A-202ENST00000611852 FRRS1LQ9P0K9 344 aa13.99□□□□□ -0.17
CCDC28A-202ENST00000611852 PPP1R3CQ9UQK1 317 aa13.99□□□□□ -0.17
CCDC28A-202ENST00000611852 CR1P17927 2039 aa13.99□□□□□ -0.17
CCDC28A-202ENST00000611852 IGHV3-64DA0A0J9YX35 117 aa13.98□□□□□ -0.17
CCDC28A-202ENST00000611852 MTRF1O75570 445 aaKnown RBP13.98□□□□□ -0.17
CCDC28A-202ENST00000611852 CST4P01036 141 aa13.98□□□□□ -0.17
CCDC28A-202ENST00000611852 HTR1AP08908 422 aa13.98□□□□□ -0.17
CCDC28A-202ENST00000611852 USF1P22415 310 aaPredicted RBP13.98□□□□□ -0.17
CCDC28A-202ENST00000611852 GPR6P46095 362 aaPredicted RBP13.98□□□□□ -0.17
CCDC28A-202ENST00000611852 LOXL1Q08397 574 aaPredicted RBP13.98□□□□□ -0.17
CCDC28A-202ENST00000611852 RIPPLY1Q0D2K3 151 aa13.98□□□□□ -0.17
CCDC28A-202ENST00000611852 Q6ZSR3 168 aa13.98□□□□□ -0.17
CCDC28A-202ENST00000611852 AHSA2Q719I0 299 aa13.98□□□□□ -0.17
CCDC28A-202ENST00000611852 SPERTQ8NA61 448 aa13.98□□□□□ -0.17
CCDC28A-202ENST00000611852 SEMA6DQ8NFY4 1073 aa13.98□□□□□ -0.17
CCDC28A-202ENST00000611852 FKBP14Q9NWM8 211 aa13.98□□□□□ -0.17
CCDC28A-202ENST00000611852 DCAF16Q9NXF7 216 aa13.98□□□□□ -0.17
CCDC28A-202ENST00000611852 EXOSC1Q9Y3B2 195 aaKnown RBP13.98□□□□□ -0.17
CCDC28A-202ENST00000611852 IGHV4-61A0A0C4DH41 118 aa13.97□□□□□ -0.17
CCDC28A-202ENST00000611852 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.97□□□□□ -0.17
CCDC28A-202ENST00000611852 ZNF816-ZNF321PA0A0X1KG74 233 aa13.97□□□□□ -0.17
CCDC28A-202ENST00000611852 LOC100289279A0A1B0GTE1 492 aa13.97□□□□□ -0.17
CCDC28A-202ENST00000611852 SLC1A7O00341 560 aa13.97□□□□□ -0.17
CCDC28A-202ENST00000611852 PPIHO43447 177 aaKnown RBP13.97□□□□□ -0.17
CCDC28A-202ENST00000611852 PTBP3O95758 552 aaKnown RBP13.97□□□□□ -0.17
CCDC28A-202ENST00000611852 MYL12AP19105 171 aa13.97□□□□□ -0.17
CCDC28A-202ENST00000611852 RBMXP38159 391 aaKnown RBP13.97□□□□□ -0.17
CCDC28A-202ENST00000611852 GNALP38405 381 aa13.97□□□□□ -0.17
CCDC28A-202ENST00000611852 CCR9P51686 369 aa13.97□□□□□ -0.17
CCDC28A-202ENST00000611852 CSNK2BP67870 215 aa13.97□□□□□ -0.17
CCDC28A-202ENST00000611852 PRDX4Q13162 271 aa13.97□□□□□ -0.17
CCDC28A-202ENST00000611852 DOK3Q7L591 496 aa13.97□□□□□ -0.17
CCDC28A-202ENST00000611852 ITPKCQ96DU7 683 aa13.97□□□□□ -0.17
CCDC28A-202ENST00000611852 TMEM106BQ9NUM4 274 aa13.97□□□□□ -0.17
CCDC28A-202ENST00000611852 CLEC2DQ9UHP7 191 aa13.97□□□□□ -0.17
CCDC28A-202ENST00000611852 PIGLQ9Y2B2 252 aa13.97□□□□□ -0.17
CCDC28A-202ENST00000611852 CAB39Q9Y376 341 aaPredicted RBP13.97□□□□□ -0.17
CCDC28A-202ENST00000611852 MPC1Q9Y5U8 109 aa13.97□□□□□ -0.17
CCDC28A-202ENST00000611852 V9GYS6 101 aa13.97□□□□□ -0.17
CCDC28A-202ENST00000611852 ZANQ9Y493 2812 aa13.97□□□□□ -0.17
CCDC28A-202ENST00000611852 ZNF850A8MQ14 1090 aa13.96□□□□□ -0.17
CCDC28A-202ENST00000611852 CLDN25C9JDP6 229 aa13.96□□□□□ -0.17
CCDC28A-202ENST00000611852 E9PI62 339 aa13.96□□□□□ -0.17
CCDC28A-202ENST00000611852 UBCP0CG48 685 aaKnown RBP13.96□□□□□ -0.17
CCDC28A-202ENST00000611852 FAHP16930 419 aa13.96□□□□□ -0.17
CCDC28A-202ENST00000611852 C21orf33P30042 268 aaPredicted RBP13.96□□□□□ -0.17
CCDC28A-202ENST00000611852 SLC3A1Q07837 685 aa13.96□□□□□ -0.17
CCDC28A-202ENST00000611852 MRPL28Q13084 256 aaKnown RBP13.96□□□□□ -0.17
CCDC28A-202ENST00000611852 ALKBH1Q13686 389 aaKnown RBP13.96□□□□□ -0.17
CCDC28A-202ENST00000611852 MPPED2Q15777 294 aa13.96□□□□□ -0.17
CCDC28A-202ENST00000611852 ZBTB37Q5TC79 503 aa13.96□□□□□ -0.17
CCDC28A-202ENST00000611852 OR2G6Q5TZ20 316 aa13.96□□□□□ -0.17
CCDC28A-202ENST00000611852 PRAMEF6Q5VXH4 476 aa13.96□□□□□ -0.17
CCDC28A-202ENST00000611852 TMPRSS11AQ6ZMR5 421 aa13.96□□□□□ -0.17
CCDC28A-202ENST00000611852 MOGAT3Q86VF5 341 aa13.96□□□□□ -0.17
CCDC28A-202ENST00000611852 RDH10Q8IZV5 341 aa13.96□□□□□ -0.17
CCDC28A-202ENST00000611852 OR14K1Q8NGZ2 314 aa13.96□□□□□ -0.17
CCDC28A-202ENST00000611852 OR8S1Q8NH09 359 aa13.96□□□□□ -0.17
CCDC28A-202ENST00000611852 ZNF420Q8TAQ5 688 aaPredicted RBP13.96□□□□□ -0.17
CCDC28A-202ENST00000611852 PIGCQ92535 297 aa13.96□□□□□ -0.17
CCDC28A-202ENST00000611852 C14orf119Q9NWQ9 140 aa13.96□□□□□ -0.17
CCDC28A-202ENST00000611852 TEP1Q99973 2627 aaKnown RBP13.96□□□□□ -0.17
CCDC28A-202ENST00000611852 CSPG4Q6UVK1 2322 aa13.96□□□□□ -0.18
CCDC28A-202ENST00000611852 A0A1B0GVI7 797 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 OR4C45A6NMZ5 311 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 DHRS7CA6NNS2 312 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 SYT7O43581 403 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 PMELP40967 661 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 MZT1Q08AG7 82 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 STX19Q8N4C7 294 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 KLHL36Q8N4N3 616 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 HAVCR2Q8TDQ0 301 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 OR5P3Q8WZ94 311 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 ERGIC1Q969X5 290 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 SMR3AQ99954 134 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 ABCB9Q9NP78 766 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 CHCHD3Q9NX63 227 aaKnown RBP13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 96.6 ms