RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 GATA3P23771 443 aa16.3■□□□□ 0.2
UPF1-212ENST00000601689 RIPPLY1Q0D2K3 151 aa16.3■□□□□ 0.2
UPF1-212ENST00000601689 SCGB2A2Q13296 93 aa16.3■□□□□ 0.2
UPF1-212ENST00000601689 CR1LQ2VPA4 569 aa16.3■□□□□ 0.2
UPF1-212ENST00000601689 ESCO2Q56NI9 601 aa16.3■□□□□ 0.2
UPF1-212ENST00000601689 PRAMEF6Q5VXH4 476 aa16.3■□□□□ 0.2
UPF1-212ENST00000601689 TTC23Q5W5X9 447 aa16.3■□□□□ 0.2
UPF1-212ENST00000601689 MBOAT4Q96T53 435 aa16.3■□□□□ 0.2
UPF1-212ENST00000601689 SOX7Q9BT81 388 aa16.3■□□□□ 0.2
UPF1-212ENST00000601689 PATZ1Q9HBE1 687 aaKnown RBP16.3■□□□□ 0.2
UPF1-212ENST00000601689 HIF1ANQ9NWT6 349 aa16.3■□□□□ 0.2
UPF1-212ENST00000601689 MIOXQ9UGB7 285 aa16.3■□□□□ 0.2
UPF1-212ENST00000601689 OR52A1Q9UKL2 312 aa16.3■□□□□ 0.2
UPF1-212ENST00000601689 NSD1Q96L73 2696 aaPredicted RBP16.3■□□□□ 0.2
UPF1-212ENST00000601689 A0A0G2JMP0 313 aa16.29■□□□□ 0.2
UPF1-212ENST00000601689 A0A0X1KG70 313 aa16.29■□□□□ 0.2
UPF1-212ENST00000601689 TMEM210A6NLX4 147 aa16.29■□□□□ 0.2
UPF1-212ENST00000601689 FAM157AC9JC47 383 aa16.29■□□□□ 0.2
UPF1-212ENST00000601689 SLC16A6O15403 523 aa16.29■□□□□ 0.2
UPF1-212ENST00000601689 FAM20BO75063 409 aa16.29■□□□□ 0.2
UPF1-212ENST00000601689 RPP14O95059 124 aaKnown RBP16.29■□□□□ 0.2
UPF1-212ENST00000601689 CST4P01036 141 aa16.29■□□□□ 0.2
UPF1-212ENST00000601689 FAM157CP0CG43 387 aa16.29■□□□□ 0.2
UPF1-212ENST00000601689 SRD5A1P18405 259 aa16.29■□□□□ 0.2
UPF1-212ENST00000601689 SRP14P37108 136 aaKnown RBP16.29■□□□□ 0.2
UPF1-212ENST00000601689 LRRC36Q1X8D7 754 aa16.29■□□□□ 0.2
UPF1-212ENST00000601689 FAM120AOSQ5T036 256 aa16.29■□□□□ 0.2
UPF1-212ENST00000601689 ZBTB37Q5TC79 503 aa16.29■□□□□ 0.2
UPF1-212ENST00000601689 KCTD8Q6ZWB6 473 aa16.29■□□□□ 0.2
UPF1-212ENST00000601689 ZDHHC23Q8IYP9 409 aa16.29■□□□□ 0.2
UPF1-212ENST00000601689 SETD9Q8NE22 299 aa16.29■□□□□ 0.2
UPF1-212ENST00000601689 OR4M2Q8NGB6 313 aa16.29■□□□□ 0.2
UPF1-212ENST00000601689 OR51E1Q8TCB6 317 aa16.29■□□□□ 0.2
UPF1-212ENST00000601689 UBE2FQ969M7 185 aa16.29■□□□□ 0.2
UPF1-212ENST00000601689 FAM71F1Q96KD3 344 aaPredicted RBP16.29■□□□□ 0.2
UPF1-212ENST00000601689 SIGLEC11Q96RL6 698 aa16.29■□□□□ 0.2
UPF1-212ENST00000601689 DCLRE1BQ9H816 532 aa16.29■□□□□ 0.2
UPF1-212ENST00000601689 GPR84Q9NQS5 396 aa16.29■□□□□ 0.2
UPF1-212ENST00000601689 ENPP5Q9UJA9 477 aa16.29■□□□□ 0.2
UPF1-212ENST00000601689 RHBDD3Q9Y3P4 386 aa16.29■□□□□ 0.2
UPF1-212ENST00000601689 RPL36Q9Y3U8 105 aaKnown RBP16.29■□□□□ 0.2
UPF1-212ENST00000601689 DOCK11Q5JSL3 2073 aa16.29■□□□□ 0.2
UPF1-212ENST00000601689 TRAV38-1A0A0B4J264 116 aa16.28■□□□□ 0.2
UPF1-212ENST00000601689 APOL3O95236 402 aa16.28■□□□□ 0.2
UPF1-212ENST00000601689 PTBP3O95758 552 aaKnown RBP16.28■□□□□ 0.2
UPF1-212ENST00000601689 FADS2O95864 444 aaKnown RBP16.28■□□□□ 0.2
UPF1-212ENST00000601689 RPS2P15880 293 aaKnown RBP16.28■□□□□ 0.2
UPF1-212ENST00000601689 ZNF12P17014 697 aa16.28■□□□□ 0.2
UPF1-212ENST00000601689 ACTA2P62736 377 aa16.28■□□□□ 0.2
UPF1-212ENST00000601689 ACTG2P63267 376 aa16.28■□□□□ 0.2
UPF1-212ENST00000601689 PRDX4Q13162 271 aa16.28■□□□□ 0.2
UPF1-212ENST00000601689 ZMYND11Q15326 602 aa16.28■□□□□ 0.2
UPF1-212ENST00000601689 FAHD2BQ6P2I3 314 aaPredicted RBP16.28■□□□□ 0.2
UPF1-212ENST00000601689 ZNF771Q7L3S4 317 aaPredicted RBP16.28■□□□□ 0.2
UPF1-212ENST00000601689 ACBD7Q8N6N7 88 aa16.28■□□□□ 0.2
UPF1-212ENST00000601689 CCDC54Q8NEL0 328 aa16.28■□□□□ 0.2
UPF1-212ENST00000601689 DVL3Q92997 716 aaPredicted RBP16.28■□□□□ 0.2
UPF1-212ENST00000601689 FAHD2AQ96GK7 314 aa16.28■□□□□ 0.2
UPF1-212ENST00000601689 C1orf123Q9NWV4 160 aa16.28■□□□□ 0.2
UPF1-212ENST00000601689 DCAF16Q9NXF7 216 aa16.28■□□□□ 0.2
UPF1-212ENST00000601689 MRM2Q9UI43 246 aaKnown RBP16.28■□□□□ 0.2
UPF1-212ENST00000601689 GNG8Q9UK08 70 aa16.28■□□□□ 0.2
UPF1-212ENST00000601689 FN1P02751 2386 aaKnown RBP16.28■□□□□ 0.2
UPF1-212ENST00000601689 SONP18583 2426 aaKnown RBP16.27■□□□□ 0.2
UPF1-212ENST00000601689 A0A1B0GVI7 797 aa16.27■□□□□ 0.2
UPF1-212ENST00000601689 ZNF850A8MQ14 1090 aa16.27■□□□□ 0.2
UPF1-212ENST00000601689 NDUFA2O43678 99 aa16.27■□□□□ 0.2
UPF1-212ENST00000601689 DHRS3O75911 302 aa16.27■□□□□ 0.2
UPF1-212ENST00000601689 MPPED2Q15777 294 aa16.27■□□□□ 0.2
UPF1-212ENST00000601689 KLHL22Q53GT1 634 aa16.27■□□□□ 0.2
UPF1-212ENST00000601689 DCAF12L2Q5VW00 463 aa16.27■□□□□ 0.2
UPF1-212ENST00000601689 LIPNQ5VXI9 398 aa16.27■□□□□ 0.2
UPF1-212ENST00000601689 DOK3Q7L591 496 aa16.27■□□□□ 0.2
UPF1-212ENST00000601689 ENTHD1Q8IYW4 607 aa16.27■□□□□ 0.2
UPF1-212ENST00000601689 ELMOD2Q8IZ81 293 aa16.27■□□□□ 0.2
UPF1-212ENST00000601689 DHRSXQ8N5I4 330 aa16.27■□□□□ 0.2
UPF1-212ENST00000601689 BOLLQ8N9W6 283 aaKnown RBP16.27■□□□□ 0.2
UPF1-212ENST00000601689 OR8B3Q8NGG8 313 aa16.27■□□□□ 0.2
UPF1-212ENST00000601689 RHOXF1Q8NHV9 184 aa16.27■□□□□ 0.2
UPF1-212ENST00000601689 CYGBQ8WWM9 190 aa16.27■□□□□ 0.2
UPF1-212ENST00000601689 RNF170Q96K19 258 aa16.27■□□□□ 0.2
UPF1-212ENST00000601689 OR8B2Q96RD0 313 aa16.27■□□□□ 0.2
UPF1-212ENST00000601689 RNPEPL1Q9HAU8 725 aa16.27■□□□□ 0.2
UPF1-212ENST00000601689 PLEKHA1Q9HB21 404 aa16.27■□□□□ 0.2
UPF1-212ENST00000601689 LRCH1Q9Y2L9 728 aa16.27■□□□□ 0.2
UPF1-212ENST00000601689 IRGMA1A4Y4 181 aa16.26■□□□□ 0.19
UPF1-212ENST00000601689 ANKRD65E5RJM6 399 aa16.26■□□□□ 0.19
UPF1-212ENST00000601689 J3QLI3 93 aa16.26■□□□□ 0.19
UPF1-212ENST00000601689 PLPP2O43688 288 aa16.26■□□□□ 0.19
UPF1-212ENST00000601689 PNPP00491 289 aa16.26■□□□□ 0.19
UPF1-212ENST00000601689 ANOS1P23352 680 aa16.26■□□□□ 0.19
UPF1-212ENST00000601689 GNB2P62879 340 aa16.26■□□□□ 0.19
UPF1-212ENST00000601689 KRTAP21-3Q3LHN1 58 aa16.26■□□□□ 0.19
UPF1-212ENST00000601689 ZNF404Q494X3 552 aa16.26■□□□□ 0.19
UPF1-212ENST00000601689 LPCAT4Q643R3 524 aa16.26■□□□□ 0.19
UPF1-212ENST00000601689 DCDC5Q6ZRR9 648 aa16.26■□□□□ 0.19
UPF1-212ENST00000601689 RFLNBQ8N5W9 214 aa16.26■□□□□ 0.19
UPF1-212ENST00000601689 OR1M1Q8NGA1 313 aa16.26■□□□□ 0.19
UPF1-212ENST00000601689 NEIL1Q96FI4 390 aaPredicted RBP16.26■□□□□ 0.19
UPF1-212ENST00000601689 LYZL4Q96KX0 146 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms