RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 ROM1Q03395 351 aa11.86□□□□□ -0.51
LIG1-218ENST00000599322 TMED1Q13445 227 aa11.86□□□□□ -0.51
LIG1-218ENST00000599322 KPNB1Q14974 876 aaKnown RBP11.86□□□□□ -0.51
LIG1-218ENST00000599322 MPPED2Q15777 294 aa11.86□□□□□ -0.51
LIG1-218ENST00000599322 ARMCX4Q5H9R4 360 aa11.86□□□□□ -0.51
LIG1-218ENST00000599322 ZNF322Q6U7Q0 402 aaPredicted RBP11.86□□□□□ -0.51
LIG1-218ENST00000599322 C1QL2Q7Z5L3 287 aa11.86□□□□□ -0.51
LIG1-218ENST00000599322 SLC35F2Q8IXU6 374 aa11.86□□□□□ -0.51
LIG1-218ENST00000599322 BPIFB2Q8N4F0 458 aa11.86□□□□□ -0.51
LIG1-218ENST00000599322 TRUB1Q8WWH5 349 aaKnown RBP11.86□□□□□ -0.51
LIG1-218ENST00000599322 PIGCQ92535 297 aa11.86□□□□□ -0.51
LIG1-218ENST00000599322 OR8B4Q96RC9 309 aa11.86□□□□□ -0.51
LIG1-218ENST00000599322 MYCBPQ99417 103 aaPredicted RBP11.86□□□□□ -0.51
LIG1-218ENST00000599322 MOB1AQ9H8S9 216 aa11.86□□□□□ -0.51
LIG1-218ENST00000599322 RNPEPL1Q9HAU8 725 aa11.86□□□□□ -0.51
LIG1-218ENST00000599322 CLN6Q9NWW5 311 aa11.86□□□□□ -0.51
LIG1-218ENST00000599322 A0A0U1RQV5 110 aa11.85□□□□□ -0.51
LIG1-218ENST00000599322 C5orf63A6NC05 138 aa11.85□□□□□ -0.51
LIG1-218ENST00000599322 CCDC182A6NF36 153 aa11.85□□□□□ -0.51
LIG1-218ENST00000599322 OOEPA6NGQ2 149 aa11.85□□□□□ -0.51
LIG1-218ENST00000599322 TMEM210A6NLX4 147 aa11.85□□□□□ -0.51
LIG1-218ENST00000599322 A8MXK9 166 aa11.85□□□□□ -0.51
LIG1-218ENST00000599322 F5H0A9 414 aaPredicted RBP11.85□□□□□ -0.51
LIG1-218ENST00000599322 LOC110117498-PIK3R3F6TDL0 507 aa11.85□□□□□ -0.51
LIG1-218ENST00000599322 PSMD9O00233 223 aa11.85□□□□□ -0.51
LIG1-218ENST00000599322 PTBP3O95758 552 aaKnown RBP11.85□□□□□ -0.51
LIG1-218ENST00000599322 KRT8P05787 483 aa11.85□□□□□ -0.51
LIG1-218ENST00000599322 EPHA1P21709 976 aa11.85□□□□□ -0.51
LIG1-218ENST00000599322 PMELP40967 661 aa11.85□□□□□ -0.51
LIG1-218ENST00000599322 CXCR4P61073 352 aa11.85□□□□□ -0.51
LIG1-218ENST00000599322 EGR3Q06889 387 aa11.85□□□□□ -0.51
LIG1-218ENST00000599322 MICBQ29980 383 aa11.85□□□□□ -0.51
LIG1-218ENST00000599322 AADACL4Q5VUY2 407 aa11.85□□□□□ -0.51
LIG1-218ENST00000599322 PRSS45Q7RTY3 260 aa11.85□□□□□ -0.51
LIG1-218ENST00000599322 ZDHHC23Q8IYP9 409 aa11.85□□□□□ -0.51
LIG1-218ENST00000599322 GALNT4Q8N4A0 578 aa11.85□□□□□ -0.51
LIG1-218ENST00000599322 OR51G2Q8NGK0 314 aa11.85□□□□□ -0.51
LIG1-218ENST00000599322 DVL3Q92997 716 aaPredicted RBP11.85□□□□□ -0.51
LIG1-218ENST00000599322 STMN2Q93045 179 aa11.85□□□□□ -0.51
LIG1-218ENST00000599322 C9orf16Q9BUW7 83 aa11.85□□□□□ -0.51
LIG1-218ENST00000599322 ADI1Q9BV57 179 aa11.85□□□□□ -0.51
LIG1-218ENST00000599322 SUCNR1Q9BXA5 334 aa11.85□□□□□ -0.51
LIG1-218ENST00000599322 GABARAPL3Q9BY60 117 aa11.85□□□□□ -0.51
LIG1-218ENST00000599322 TMPRSS13Q9BYE2 586 aa11.85□□□□□ -0.51
LIG1-218ENST00000599322 HAO2Q9NYQ3 351 aa11.85□□□□□ -0.51
LIG1-218ENST00000599322 KLHDC2Q9Y2U9 406 aa11.85□□□□□ -0.51
LIG1-218ENST00000599322 POLR3KQ9Y2Y1 108 aaPredicted RBP11.85□□□□□ -0.51
LIG1-218ENST00000599322 RHBDD3Q9Y3P4 386 aa11.85□□□□□ -0.51
LIG1-218ENST00000599322 ZNF816-ZNF321PA0A0X1KG74 233 aa11.84□□□□□ -0.51
LIG1-218ENST00000599322 ZNF850A8MQ14 1090 aa11.84□□□□□ -0.51
LIG1-218ENST00000599322 C3orf80F5H4A9 247 aa11.84□□□□□ -0.51
LIG1-218ENST00000599322 CST4P01036 141 aa11.84□□□□□ -0.51
LIG1-218ENST00000599322 OR2T7P0C7T2 308 aa11.84□□□□□ -0.51
LIG1-218ENST00000599322 ZFP36P26651 326 aaKnown RBP11.84□□□□□ -0.51
LIG1-218ENST00000599322 HTR1FP30939 366 aa11.84□□□□□ -0.51
LIG1-218ENST00000599322 RIPPLY1Q0D2K3 151 aa11.84□□□□□ -0.51
LIG1-218ENST00000599322 ZNF154Q13106 437 aa11.84□□□□□ -0.51
LIG1-218ENST00000599322 PRDX4Q13162 271 aa11.84□□□□□ -0.51
LIG1-218ENST00000599322 KRTAP24-1Q3LI83 254 aa11.84□□□□□ -0.51
LIG1-218ENST00000599322 BCL2L15Q5TBC7 163 aa11.84□□□□□ -0.51
LIG1-218ENST00000599322 SFRP4Q6FHJ7 346 aaPredicted RBP11.84□□□□□ -0.51
LIG1-218ENST00000599322 SEMA6DQ8NFY4 1073 aa11.84□□□□□ -0.51
LIG1-218ENST00000599322 OR1M1Q8NGA1 313 aa11.84□□□□□ -0.51
LIG1-218ENST00000599322 OR8B12Q8NGG6 310 aa11.84□□□□□ -0.51
LIG1-218ENST00000599322 OR2T27Q8NH04 317 aa11.84□□□□□ -0.51
LIG1-218ENST00000599322 RAB40AQ8WXH6 277 aa11.84□□□□□ -0.51
LIG1-218ENST00000599322 MRPL48Q96GC5 212 aaKnown RBP11.84□□□□□ -0.51
LIG1-218ENST00000599322 RNF170Q96K19 258 aa11.84□□□□□ -0.51
LIG1-218ENST00000599322 TECTBQ96PL2 329 aa11.84□□□□□ -0.51
LIG1-218ENST00000599322 PKP2Q99959 881 aa11.84□□□□□ -0.51
LIG1-218ENST00000599322 PBOV1Q9GZY1 135 aa11.84□□□□□ -0.51
LIG1-218ENST00000599322 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.84□□□□□ -0.51
LIG1-218ENST00000599322 INSIG2Q9Y5U4 225 aa11.84□□□□□ -0.51
LIG1-218ENST00000599322 ADAM20O43506 726 aa11.83□□□□□ -0.52
LIG1-218ENST00000599322 LIPFP07098 398 aa11.83□□□□□ -0.52
LIG1-218ENST00000599322 MUC1P15941 1255 aaPredicted RBP11.83□□□□□ -0.52
LIG1-218ENST00000599322 ZNF12P17014 697 aa11.83□□□□□ -0.52
LIG1-218ENST00000599322 EPHA2P29317 976 aa11.83□□□□□ -0.52
LIG1-218ENST00000599322 CD80P33681 288 aa11.83□□□□□ -0.52
LIG1-218ENST00000599322 ALDH3A2P51648 485 aa11.83□□□□□ -0.52
LIG1-218ENST00000599322 FAM201AQ5SY85 155 aa11.83□□□□□ -0.52
LIG1-218ENST00000599322 ZBTB37Q5TC79 503 aa11.83□□□□□ -0.52
LIG1-218ENST00000599322 MEDAGQ5VYS4 303 aa11.83□□□□□ -0.52
LIG1-218ENST00000599322 PLEKHG7Q6ZR37 379 aa11.83□□□□□ -0.52
LIG1-218ENST00000599322 SLC36A1Q7Z2H8 476 aa11.83□□□□□ -0.52
LIG1-218ENST00000599322 FAM220AQ7Z4H9 259 aa11.83□□□□□ -0.52
LIG1-218ENST00000599322 YIPF7Q8N8F6 280 aa11.83□□□□□ -0.52
LIG1-218ENST00000599322 LRRC29Q8WV35 223 aa11.83□□□□□ -0.52
LIG1-218ENST00000599322 FAM71F1Q96KD3 344 aaPredicted RBP11.83□□□□□ -0.52
LIG1-218ENST00000599322 TTTY10Q9BZA0 68 aa11.83□□□□□ -0.52
LIG1-218ENST00000599322 FAM206AQ9NX38 181 aa11.83□□□□□ -0.52
LIG1-218ENST00000599322 USE1Q9NZ43 259 aa11.83□□□□□ -0.52
LIG1-218ENST00000599322 ZNF319Q9P2F9 582 aa11.83□□□□□ -0.52
LIG1-218ENST00000599322 DNAJB11Q9UBS4 358 aa11.83□□□□□ -0.52
LIG1-218ENST00000599322 NUFIP1Q9UHK0 495 aaKnown RBP11.83□□□□□ -0.52
LIG1-218ENST00000599322 ENPP5Q9UJA9 477 aa11.83□□□□□ -0.52
LIG1-218ENST00000599322 SNX5Q9Y5X3 404 aa11.83□□□□□ -0.52
LIG1-218ENST00000599322 TRIM77I1YAP6 450 aa11.82□□□□□ -0.52
LIG1-218ENST00000599322 M0R129 80 aa11.82□□□□□ -0.52
LIG1-218ENST00000599322 EI24O14681 340 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms