RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 ADAM20O43506 726 aa12.53□□□□□ -0.4
LIG1-215ENST00000597901 MITFO75030 526 aaPredicted RBP12.53□□□□□ -0.4
LIG1-215ENST00000597901 ATP5HO75947 161 aa12.53□□□□□ -0.4
LIG1-215ENST00000597901 GYPAP02724 150 aa12.53□□□□□ -0.4
LIG1-215ENST00000597901 GNALP38405 381 aa12.53□□□□□ -0.4
LIG1-215ENST00000597901 COMPP49747 757 aaPredicted RBP12.53□□□□□ -0.4
LIG1-215ENST00000597901 ESRRGP62508 458 aa12.53□□□□□ -0.4
LIG1-215ENST00000597901 UBA52P62987 128 aaKnown RBP12.53□□□□□ -0.4
LIG1-215ENST00000597901 ATP6AP1Q15904 470 aa12.53□□□□□ -0.4
LIG1-215ENST00000597901 SNCBQ16143 134 aa12.53□□□□□ -0.4
LIG1-215ENST00000597901 DEGS2Q6QHC5 323 aa12.53□□□□□ -0.4
LIG1-215ENST00000597901 KRT77Q7Z794 578 aa12.53□□□□□ -0.4
LIG1-215ENST00000597901 GALNT4Q8N4A0 578 aa12.53□□□□□ -0.4
LIG1-215ENST00000597901 LYZL4Q96KX0 146 aa12.53□□□□□ -0.4
LIG1-215ENST00000597901 ZNF48Q96MX3 618 aaPredicted RBP12.53□□□□□ -0.4
LIG1-215ENST00000597901 KIF17Q9P2E2 1029 aa12.53□□□□□ -0.4
LIG1-215ENST00000597901 AP4S1Q9Y587 144 aa12.53□□□□□ -0.4
LIG1-215ENST00000597901 WNK2Q9Y3S1 2297 aa12.53□□□□□ -0.4
LIG1-215ENST00000597901 IGHV3OR15-7A0A075B7D8 119 aa12.52□□□□□ -0.41
LIG1-215ENST00000597901 CCDC182A6NF36 153 aa12.52□□□□□ -0.41
LIG1-215ENST00000597901 C22orf46C9J442 243 aa12.52□□□□□ -0.41
LIG1-215ENST00000597901 PRKYO43930 277 aa12.52□□□□□ -0.41
LIG1-215ENST00000597901 LIPFP07098 398 aa12.52□□□□□ -0.41
LIG1-215ENST00000597901 EGR1P18146 543 aa12.52□□□□□ -0.41
LIG1-215ENST00000597901 ACKR3P25106 362 aa12.52□□□□□ -0.41
LIG1-215ENST00000597901 FASP25445 335 aa12.52□□□□□ -0.41
LIG1-215ENST00000597901 CFPP27918 469 aa12.52□□□□□ -0.41
LIG1-215ENST00000597901 EFNB1P98172 346 aa12.52□□□□□ -0.41
LIG1-215ENST00000597901 TEX36Q5VZQ5 186 aa12.52□□□□□ -0.41
LIG1-215ENST00000597901 KCTD18Q6PI47 426 aaPredicted RBP12.52□□□□□ -0.41
LIG1-215ENST00000597901 FAM90A1Q86YD7 464 aa12.52□□□□□ -0.41
LIG1-215ENST00000597901 LRRC29Q8WV35 223 aa12.52□□□□□ -0.41
LIG1-215ENST00000597901 ITPKCQ96DU7 683 aa12.52□□□□□ -0.41
LIG1-215ENST00000597901 TECTBQ96PL2 329 aa12.52□□□□□ -0.41
LIG1-215ENST00000597901 MICU1Q9BPX6 476 aa12.52□□□□□ -0.41
LIG1-215ENST00000597901 PAPOLGQ9BWT3 736 aaKnown RBP12.52□□□□□ -0.41
LIG1-215ENST00000597901 LRP12Q9Y561 859 aa12.52□□□□□ -0.41
LIG1-215ENST00000597901 MPC1Q9Y5U8 109 aa12.52□□□□□ -0.41
LIG1-215ENST00000597901 ACOD1A6NK06 481 aa12.51□□□□□ -0.41
LIG1-215ENST00000597901 ANXA2P2A6NMY6 339 aa12.51□□□□□ -0.41
LIG1-215ENST00000597901 ZNF850A8MQ14 1090 aa12.51□□□□□ -0.41
LIG1-215ENST00000597901 PSMD9O00233 223 aa12.51□□□□□ -0.41
LIG1-215ENST00000597901 CDIPTO14735 213 aa12.51□□□□□ -0.41
LIG1-215ENST00000597901 ENSAO43768 121 aaKnown RBP12.51□□□□□ -0.41
LIG1-215ENST00000597901 PLATP00750 562 aa12.51□□□□□ -0.41
LIG1-215ENST00000597901 CST4P01036 141 aa12.51□□□□□ -0.41
LIG1-215ENST00000597901 MRPL3P09001 348 aaKnown RBP12.51□□□□□ -0.41
LIG1-215ENST00000597901 MUC1P15941 1255 aaPredicted RBP12.51□□□□□ -0.41
LIG1-215ENST00000597901 PRTN3P24158 256 aa12.51□□□□□ -0.41
LIG1-215ENST00000597901 EPHA2P29317 976 aa12.51□□□□□ -0.41
LIG1-215ENST00000597901 CFHR2P36980 270 aa12.51□□□□□ -0.41
LIG1-215ENST00000597901 PSMA6P60900 246 aaKnown RBP12.51□□□□□ -0.41
LIG1-215ENST00000597901 FGF12P61328 243 aa12.51□□□□□ -0.41
LIG1-215ENST00000597901 CSNK2BP67870 215 aa12.51□□□□□ -0.41
LIG1-215ENST00000597901 IL5RAQ01344 420 aa12.51□□□□□ -0.41
LIG1-215ENST00000597901 BAMBIQ13145 260 aa12.51□□□□□ -0.41
LIG1-215ENST00000597901 PRDX4Q13162 271 aa12.51□□□□□ -0.41
LIG1-215ENST00000597901 WDR82Q6UXN9 313 aa12.51□□□□□ -0.41
LIG1-215ENST00000597901 C9orf139Q6ZV77 190 aa12.51□□□□□ -0.41
LIG1-215ENST00000597901 MEPCEQ7L2J0 689 aaKnown RBP12.51□□□□□ -0.41
LIG1-215ENST00000597901 BCDIN3DQ7Z5W3 292 aaKnown RBP12.51□□□□□ -0.41
LIG1-215ENST00000597901 AMIGO2Q86SJ2 522 aa12.51□□□□□ -0.41
LIG1-215ENST00000597901 FTMTQ8N4E7 242 aa12.51□□□□□ -0.41
LIG1-215ENST00000597901 C3orf56Q8N813 242 aa12.51□□□□□ -0.41
LIG1-215ENST00000597901 OR8B12Q8NGG6 310 aa12.51□□□□□ -0.41
LIG1-215ENST00000597901 OR5P3Q8WZ94 311 aa12.51□□□□□ -0.41
LIG1-215ENST00000597901 PIGCQ92535 297 aa12.51□□□□□ -0.41
LIG1-215ENST00000597901 DUS3LQ96G46 650 aaKnown RBP12.51□□□□□ -0.41
LIG1-215ENST00000597901 MROQ9BYG7 248 aa12.51□□□□□ -0.41
LIG1-215ENST00000597901 TLNRD1Q9H1K6 362 aa12.51□□□□□ -0.41
LIG1-215ENST00000597901 KRT84Q9NSB2 600 aa12.51□□□□□ -0.41
LIG1-215ENST00000597901 H2AFY2Q9P0M6 372 aaPredicted RBP12.51□□□□□ -0.41
LIG1-215ENST00000597901 KAAG1Q9UBP8 84 aa12.51□□□□□ -0.41
LIG1-215ENST00000597901 TMEM269A0A1B0GVZ9 245 aa12.5□□□□□ -0.41
LIG1-215ENST00000597901 DVL1O14640 695 aa12.5□□□□□ -0.41
LIG1-215ENST00000597901 ZNF254O75437 659 aa12.5□□□□□ -0.41
LIG1-215ENST00000597901 FCN3O75636 299 aa12.5□□□□□ -0.41
LIG1-215ENST00000597901 DCTDP32321 178 aa12.5□□□□□ -0.41
LIG1-215ENST00000597901 MTNR1AP48039 350 aa12.5□□□□□ -0.41
LIG1-215ENST00000597901 ROM1Q03395 351 aa12.5□□□□□ -0.41
LIG1-215ENST00000597901 MICBQ29980 383 aa12.5□□□□□ -0.41
LIG1-215ENST00000597901 FAM76BQ5HYJ3 339 aa12.5□□□□□ -0.41
LIG1-215ENST00000597901 LCN1P1Q5VSP4 162 aa12.5□□□□□ -0.41
LIG1-215ENST00000597901 C1orf146Q5VVC0 180 aa12.5□□□□□ -0.41
LIG1-215ENST00000597901 SLX4IPQ5VYV7 408 aa12.5□□□□□ -0.41
LIG1-215ENST00000597901 KDM4DQ6B0I6 523 aa12.5□□□□□ -0.41
LIG1-215ENST00000597901 KRT74Q7RTS7 529 aa12.5□□□□□ -0.41
LIG1-215ENST00000597901 ZDHHC13Q8IUH4 622 aa12.5□□□□□ -0.41
LIG1-215ENST00000597901 TCEANCQ8N8B7 351 aa12.5□□□□□ -0.41
LIG1-215ENST00000597901 PPP1R14AQ96A00 147 aa12.5□□□□□ -0.41
LIG1-215ENST00000597901 SEH1LQ96EE3 360 aa12.5□□□□□ -0.41
LIG1-215ENST00000597901 RNF170Q96K19 258 aa12.5□□□□□ -0.41
LIG1-215ENST00000597901 C1orf147Q96MC9 270 aaPredicted RBP12.5□□□□□ -0.41
LIG1-215ENST00000597901 DUX5Q96PT3 197 aa12.5□□□□□ -0.41
LIG1-215ENST00000597901 CCL13Q99616 98 aa12.5□□□□□ -0.41
LIG1-215ENST00000597901 RTL8AQ9BWD3 113 aa12.5□□□□□ -0.41
LIG1-215ENST00000597901 SMURF1Q9HCE7 757 aa12.5□□□□□ -0.41
LIG1-215ENST00000597901 ZNF391Q9UJN7 358 aa12.5□□□□□ -0.41
LIG1-215ENST00000597901 COPS3Q9UNS2 423 aa12.5□□□□□ -0.41
LIG1-215ENST00000597901 TMEM14AQ9Y6G1 99 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms