RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 TRUB1Q8WWH5 349 aaKnown RBP13.57□□□□□ -0.24
TRIM28-206ENST00000595974 RFKQ969G6 155 aa13.57□□□□□ -0.24
TRIM28-206ENST00000595974 NEIL1Q96FI4 390 aaPredicted RBP13.57□□□□□ -0.24
TRIM28-206ENST00000595974 HRASLS5Q96KN8 279 aa13.57□□□□□ -0.24
TRIM28-206ENST00000595974 LYZL4Q96KX0 146 aa13.57□□□□□ -0.24
TRIM28-206ENST00000595974 MDFIQ99750 246 aa13.57□□□□□ -0.24
TRIM28-206ENST00000595974 C9orf16Q9BUW7 83 aa13.57□□□□□ -0.24
TRIM28-206ENST00000595974 SSBP3Q9BWW4 388 aaPredicted RBP13.57□□□□□ -0.24
TRIM28-206ENST00000595974 METTL17Q9H7H0 456 aaPredicted RBP13.57□□□□□ -0.24
TRIM28-206ENST00000595974 S100A14Q9HCY8 104 aa13.57□□□□□ -0.24
TRIM28-206ENST00000595974 TRIM36Q9NQ86 728 aa13.57□□□□□ -0.24
TRIM28-206ENST00000595974 C1orf123Q9NWV4 160 aa13.57□□□□□ -0.24
TRIM28-206ENST00000595974 IMPAD1Q9NX62 359 aa13.57□□□□□ -0.24
TRIM28-206ENST00000595974 OR5V1Q9UGF6 321 aa13.57□□□□□ -0.24
TRIM28-206ENST00000595974 NUFIP1Q9UHK0 495 aaKnown RBP13.57□□□□□ -0.24
TRIM28-206ENST00000595974 RHBDD3Q9Y3P4 386 aa13.57□□□□□ -0.24
TRIM28-206ENST00000595974 hCG_1807616A0A1W2PRN6 198 aa13.56□□□□□ -0.24
TRIM28-206ENST00000595974 LGALS8O00214 317 aa13.56□□□□□ -0.24
TRIM28-206ENST00000595974 CST4P01036 141 aa13.56□□□□□ -0.24
TRIM28-206ENST00000595974 GRPP07492 148 aa13.56□□□□□ -0.24
TRIM28-206ENST00000595974 ATP6V1B1P15313 513 aa13.56□□□□□ -0.24
TRIM28-206ENST00000595974 ZNF154Q13106 437 aa13.56□□□□□ -0.24
TRIM28-206ENST00000595974 C1orf229Q6ZS94 237 aaPredicted RBP13.56□□□□□ -0.24
TRIM28-206ENST00000595974 C1QL2Q7Z5L3 287 aa13.56□□□□□ -0.24
TRIM28-206ENST00000595974 PQLC1Q8N2U9 271 aa13.56□□□□□ -0.24
TRIM28-206ENST00000595974 CBR4Q8N4T8 237 aa13.56□□□□□ -0.24
TRIM28-206ENST00000595974 OR8B3Q8NGG8 313 aa13.56□□□□□ -0.24
TRIM28-206ENST00000595974 ITPKCQ96DU7 683 aa13.56□□□□□ -0.24
TRIM28-206ENST00000595974 OR8B2Q96RD0 313 aa13.56□□□□□ -0.24
TRIM28-206ENST00000595974 MICU1Q9BPX6 476 aa13.56□□□□□ -0.24
TRIM28-206ENST00000595974 RTL8AQ9BWD3 113 aa13.56□□□□□ -0.24
TRIM28-206ENST00000595974 PBOV1Q9GZY1 135 aa13.56□□□□□ -0.24
TRIM28-206ENST00000595974 METRNQ9UJH8 293 aa13.56□□□□□ -0.24
TRIM28-206ENST00000595974 LOC105371242A0A075B767 164 aa13.55□□□□□ -0.24
TRIM28-206ENST00000595974 LOC110117498-PIK3R3F6TDL0 507 aa13.55□□□□□ -0.24
TRIM28-206ENST00000595974 AVPP01185 164 aa13.55□□□□□ -0.24
TRIM28-206ENST00000595974 IGLV3-1P01715 115 aa13.55□□□□□ -0.24
TRIM28-206ENST00000595974 OR2T7P0C7T2 308 aa13.55□□□□□ -0.24
TRIM28-206ENST00000595974 ZNF12P17014 697 aa13.55□□□□□ -0.24
TRIM28-206ENST00000595974 MAP2K3P46734 347 aa13.55□□□□□ -0.24
TRIM28-206ENST00000595974 PITPNBP48739 271 aa13.55□□□□□ -0.24
TRIM28-206ENST00000595974 GNB2P62879 340 aa13.55□□□□□ -0.24
TRIM28-206ENST00000595974 PRDX4Q13162 271 aa13.55□□□□□ -0.24
TRIM28-206ENST00000595974 KRT74Q7RTS7 529 aa13.55□□□□□ -0.24
TRIM28-206ENST00000595974 WDR86Q86TI4 376 aa13.55□□□□□ -0.24
TRIM28-206ENST00000595974 COMMD2Q86X83 199 aa13.55□□□□□ -0.24
TRIM28-206ENST00000595974 GALNT4Q8N4A0 578 aa13.55□□□□□ -0.24
TRIM28-206ENST00000595974 OR1M1Q8NGA1 313 aa13.55□□□□□ -0.24
TRIM28-206ENST00000595974 OR2T27Q8NH04 317 aa13.55□□□□□ -0.24
TRIM28-206ENST00000595974 TMEM158Q8WZ71 300 aa13.55□□□□□ -0.24
TRIM28-206ENST00000595974 EME1Q96AY2 570 aa13.55□□□□□ -0.24
TRIM28-206ENST00000595974 C7orf69Q9H7B7 122 aa13.55□□□□□ -0.24
TRIM28-206ENST00000595974 RNPEPL1Q9HAU8 725 aa13.55□□□□□ -0.24
TRIM28-206ENST00000595974 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.55□□□□□ -0.24
TRIM28-206ENST00000595974 R4GMQ9 66 aa13.55□□□□□ -0.24
TRIM28-206ENST00000595974 TRAV38-1A0A0B4J264 116 aa13.54□□□□□ -0.24
TRIM28-206ENST00000595974 ZNF816-ZNF321PA0A0X1KG74 233 aa13.54□□□□□ -0.24
TRIM28-206ENST00000595974 OOEPA6NGQ2 149 aa13.54□□□□□ -0.24
TRIM28-206ENST00000595974 TMEM210A6NLX4 147 aa13.54□□□□□ -0.24
TRIM28-206ENST00000595974 ZNF850A8MQ14 1090 aa13.54□□□□□ -0.24
TRIM28-206ENST00000595974 RNF212BA8MTL3 300 aa13.54□□□□□ -0.24
TRIM28-206ENST00000595974 E9PQ18 207 aa13.54□□□□□ -0.24
TRIM28-206ENST00000595974 SRSF10O75494 262 aaKnown RBP13.54□□□□□ -0.24
TRIM28-206ENST00000595974 CD80P33681 288 aa13.54□□□□□ -0.24
TRIM28-206ENST00000595974 PSMB10P40306 273 aa13.54□□□□□ -0.24
TRIM28-206ENST00000595974 MFGE8Q08431 387 aaPredicted RBP13.54□□□□□ -0.24
TRIM28-206ENST00000595974 ZNF826PQ6ZT77 177 aa13.54□□□□□ -0.24
TRIM28-206ENST00000595974 ZDHHC23Q8IYP9 409 aa13.54□□□□□ -0.24
TRIM28-206ENST00000595974 GCSAMQ8N6F7 178 aa13.54□□□□□ -0.24
TRIM28-206ENST00000595974 BOLLQ8N9W6 283 aaKnown RBP13.54□□□□□ -0.24
TRIM28-206ENST00000595974 C19orf18Q8NEA5 215 aa13.54□□□□□ -0.24
TRIM28-206ENST00000595974 DEFB108BQ8NET1 73 aa13.54□□□□□ -0.24
TRIM28-206ENST00000595974 STMN2Q93045 179 aa13.54□□□□□ -0.24
TRIM28-206ENST00000595974 APOL4Q9BPW4 351 aa13.54□□□□□ -0.24
TRIM28-206ENST00000595974 TLNRD1Q9H1K6 362 aa13.54□□□□□ -0.24
TRIM28-206ENST00000595974 GPR84Q9NQS5 396 aa13.54□□□□□ -0.24
TRIM28-206ENST00000595974 MMP26Q9NRE1 261 aa13.54□□□□□ -0.24
TRIM28-206ENST00000595974 OPN4Q9UHM6 478 aa13.54□□□□□ -0.24
TRIM28-206ENST00000595974 MRM2Q9UI43 246 aaKnown RBP13.54□□□□□ -0.24
TRIM28-206ENST00000595974 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.54□□□□□ -0.24
TRIM28-206ENST00000595974 GTF2A1LQ9UNN4 478 aa13.54□□□□□ -0.24
TRIM28-206ENST00000595974 INSIG2Q9Y5U4 225 aa13.54□□□□□ -0.24
TRIM28-206ENST00000595974 C3orf80F5H4A9 247 aa13.53□□□□□ -0.24
TRIM28-206ENST00000595974 TRAPPC2LH3BP13 241 aa13.53□□□□□ -0.24
TRIM28-206ENST00000595974 NDUFA2O43678 99 aa13.53□□□□□ -0.24
TRIM28-206ENST00000595974 TCF21O43680 179 aa13.53□□□□□ -0.24
TRIM28-206ENST00000595974 MTRF1O75570 445 aaKnown RBP13.53□□□□□ -0.24
TRIM28-206ENST00000595974 LHBP01229 141 aa13.53□□□□□ -0.24
TRIM28-206ENST00000595974 TTRP02766 147 aa13.53□□□□□ -0.24
TRIM28-206ENST00000595974 KRT8P05787 483 aa13.53□□□□□ -0.24
TRIM28-206ENST00000595974 ATP6V1E1P36543 226 aa13.53□□□□□ -0.24
TRIM28-206ENST00000595974 CFHR2P36980 270 aa13.53□□□□□ -0.24
TRIM28-206ENST00000595974 SNRPGP62308 76 aaKnown RBP13.53□□□□□ -0.24
TRIM28-206ENST00000595974 CSNK2BP67870 215 aa13.53□□□□□ -0.24
TRIM28-206ENST00000595974 ZIK1Q3SY52 487 aaPredicted RBP13.53□□□□□ -0.24
TRIM28-206ENST00000595974 SLC25A30Q5SVS4 291 aa13.53□□□□□ -0.24
TRIM28-206ENST00000595974 BCL2L15Q5TBC7 163 aa13.53□□□□□ -0.24
TRIM28-206ENST00000595974 ZBTB37Q5TC79 503 aa13.53□□□□□ -0.24
TRIM28-206ENST00000595974 LIPNQ5VXI9 398 aa13.53□□□□□ -0.24
TRIM28-206ENST00000595974 MEDAGQ5VYS4 303 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms