RNA–Protein interactions for RNA: ENST00000595758.5

LIG1-208, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 606 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-208ENST00000595758 PRSS35Q8N3Z0 413 aa12.15□□□□□ -0.46
LIG1-208ENST00000595758 CELF2-AS1Q8N7Q2 184 aa12.15□□□□□ -0.46
LIG1-208ENST00000595758 MAPK1IP1LQ8NDC0 245 aa12.15□□□□□ -0.46
LIG1-208ENST00000595758 SEMA6DQ8NFY4 1073 aa12.15□□□□□ -0.46
LIG1-208ENST00000595758 OR2G2Q8NGZ5 317 aa12.15□□□□□ -0.46
LIG1-208ENST00000595758 DVL3Q92997 716 aaPredicted RBP12.15□□□□□ -0.46
LIG1-208ENST00000595758 RNF166Q96A37 237 aaPredicted RBP12.15□□□□□ -0.46
LIG1-208ENST00000595758 BPESC1Q9GZL8 116 aa12.15□□□□□ -0.46
LIG1-208ENST00000595758 CHCHD3Q9NX63 227 aaKnown RBP12.15□□□□□ -0.46
LIG1-208ENST00000595758 CNOT2Q9NZN8 540 aaKnown RBP12.15□□□□□ -0.46
LIG1-208ENST00000595758 PPP1R3CQ9UQK1 317 aa12.15□□□□□ -0.46
LIG1-208ENST00000595758 EXOSC1Q9Y3B2 195 aaKnown RBP12.15□□□□□ -0.46
LIG1-208ENST00000595758 VPS13CQ709C8 3753 aa12.15□□□□□ -0.47
LIG1-208ENST00000595758 ZNF816-ZNF321PA0A0X1KG74 233 aa12.14□□□□□ -0.47
LIG1-208ENST00000595758 A0A1B0GVI7 797 aa12.14□□□□□ -0.47
LIG1-208ENST00000595758 CLDN25C9JDP6 229 aa12.14□□□□□ -0.47
LIG1-208ENST00000595758 DHRS3O75911 302 aa12.14□□□□□ -0.47
LIG1-208ENST00000595758 INHBBP09529 407 aa12.14□□□□□ -0.47
LIG1-208ENST00000595758 CD200P41217 278 aa12.14□□□□□ -0.47
LIG1-208ENST00000595758 KIR3DL2P43630 455 aa12.14□□□□□ -0.47
LIG1-208ENST00000595758 GBX2P52951 348 aaPredicted RBP12.14□□□□□ -0.47
LIG1-208ENST00000595758 SLC3A1Q07837 685 aa12.14□□□□□ -0.47
LIG1-208ENST00000595758 MRPL28Q13084 256 aaKnown RBP12.14□□□□□ -0.47
LIG1-208ENST00000595758 MAB21L1Q13394 359 aa12.14□□□□□ -0.47
LIG1-208ENST00000595758 TMPRSS11AQ6ZMR5 421 aa12.14□□□□□ -0.47
LIG1-208ENST00000595758 AHSA2Q719I0 299 aa12.14□□□□□ -0.47
LIG1-208ENST00000595758 DOK3Q7L591 496 aa12.14□□□□□ -0.47
LIG1-208ENST00000595758 PLPP7Q8NBV4 271 aa12.14□□□□□ -0.47
LIG1-208ENST00000595758 OR8S1Q8NH09 359 aa12.14□□□□□ -0.47
LIG1-208ENST00000595758 PIGCQ92535 297 aa12.14□□□□□ -0.47
LIG1-208ENST00000595758 GCM1Q9NP62 436 aa12.14□□□□□ -0.47
LIG1-208ENST00000595758 TMEM106BQ9NUM4 274 aa12.14□□□□□ -0.47
LIG1-208ENST00000595758 C14orf119Q9NWQ9 140 aa12.14□□□□□ -0.47
LIG1-208ENST00000595758 FRRS1LQ9P0K9 344 aa12.14□□□□□ -0.47
LIG1-208ENST00000595758 RAB26Q9ULW5 256 aa12.14□□□□□ -0.47
LIG1-208ENST00000595758 PIGLQ9Y2B2 252 aa12.14□□□□□ -0.47
LIG1-208ENST00000595758 MPC1Q9Y5U8 109 aa12.14□□□□□ -0.47
LIG1-208ENST00000595758 MED13LQ71F56 2210 aa12.13□□□□□ -0.47
LIG1-208ENST00000595758 A0A096LNT2 108 aa12.13□□□□□ -0.47
LIG1-208ENST00000595758 IGHV4-61A0A0C4DH41 118 aa12.13□□□□□ -0.47
LIG1-208ENST00000595758 ANXA2P2A6NMY6 339 aa12.13□□□□□ -0.47
LIG1-208ENST00000595758 ZNF850A8MQ14 1090 aa12.13□□□□□ -0.47
LIG1-208ENST00000595758 IFNL4K9M1U5 179 aa12.13□□□□□ -0.47
LIG1-208ENST00000595758 SYT7O43581 403 aa12.13□□□□□ -0.47
LIG1-208ENST00000595758 UBCP0CG48 685 aaKnown RBP12.13□□□□□ -0.47
LIG1-208ENST00000595758 CCL1P22362 96 aa12.13□□□□□ -0.47
LIG1-208ENST00000595758 GATA4P43694 442 aa12.13□□□□□ -0.47
LIG1-208ENST00000595758 CCR9P51686 369 aa12.13□□□□□ -0.47
LIG1-208ENST00000595758 NANOS3P60323 173 aaKnown RBP12.13□□□□□ -0.47
LIG1-208ENST00000595758 MVKQ03426 396 aa12.13□□□□□ -0.47
LIG1-208ENST00000595758 LOXL1Q08397 574 aaPredicted RBP12.13□□□□□ -0.47
LIG1-208ENST00000595758 PRDX4Q13162 271 aa12.13□□□□□ -0.47
LIG1-208ENST00000595758 ZBTB37Q5TC79 503 aa12.13□□□□□ -0.47
LIG1-208ENST00000595758 MOGAT3Q86VF5 341 aa12.13□□□□□ -0.47
LIG1-208ENST00000595758 RDH10Q8IZV5 341 aa12.13□□□□□ -0.47
LIG1-208ENST00000595758 STX19Q8N4C7 294 aa12.13□□□□□ -0.47
LIG1-208ENST00000595758 KLHL36Q8N4N3 616 aa12.13□□□□□ -0.47
LIG1-208ENST00000595758 OR14K1Q8NGZ2 314 aa12.13□□□□□ -0.47
LIG1-208ENST00000595758 HAVCR2Q8TDQ0 301 aa12.13□□□□□ -0.47
LIG1-208ENST00000595758 RAB1CQ92928 201 aa12.13□□□□□ -0.47
LIG1-208ENST00000595758 TIMD4Q96H15 378 aa12.13□□□□□ -0.47
LIG1-208ENST00000595758 ZNF184Q99676 751 aaPredicted RBP12.13□□□□□ -0.47
LIG1-208ENST00000595758 PPP1R3EQ9H7J1 279 aa12.13□□□□□ -0.47
LIG1-208ENST00000595758 ABCB9Q9NP78 766 aa12.13□□□□□ -0.47
LIG1-208ENST00000595758 FKBP14Q9NWM8 211 aa12.13□□□□□ -0.47
LIG1-208ENST00000595758 SCN3BQ9NY72 215 aa12.13□□□□□ -0.47
LIG1-208ENST00000595758 CLEC2DQ9UHP7 191 aa12.13□□□□□ -0.47
LIG1-208ENST00000595758 ENPP5Q9UJA9 477 aa12.13□□□□□ -0.47
LIG1-208ENST00000595758 CAB39Q9Y376 341 aaPredicted RBP12.13□□□□□ -0.47
LIG1-208ENST00000595758 TEP1Q99973 2627 aaKnown RBP12.12□□□□□ -0.47
LIG1-208ENST00000595758 LOC100289279A0A1B0GTE1 492 aa12.12□□□□□ -0.47
LIG1-208ENST00000595758 PTGES3LE9PB15 166 aa12.12□□□□□ -0.47
LIG1-208ENST00000595758 E9PI62 339 aa12.12□□□□□ -0.47
LIG1-208ENST00000595758 H3BSH0 61 aa12.12□□□□□ -0.47
LIG1-208ENST00000595758 SLC1A7O00341 560 aa12.12□□□□□ -0.47
LIG1-208ENST00000595758 GRPP07492 148 aa12.12□□□□□ -0.47
LIG1-208ENST00000595758 FAHP16930 419 aa12.12□□□□□ -0.47
LIG1-208ENST00000595758 HNRNPA0Q13151 305 aaKnown RBP12.12□□□□□ -0.47
LIG1-208ENST00000595758 ALKBH1Q13686 389 aaKnown RBP12.12□□□□□ -0.47
LIG1-208ENST00000595758 AVPI1Q5T686 147 aa12.12□□□□□ -0.47
LIG1-208ENST00000595758 OR2G6Q5TZ20 316 aa12.12□□□□□ -0.47
LIG1-208ENST00000595758 TMEM244Q5VVB8 128 aa12.12□□□□□ -0.47
LIG1-208ENST00000595758 PRAMEF6Q5VXH4 476 aa12.12□□□□□ -0.47
LIG1-208ENST00000595758 Q6ZSR3 168 aa12.12□□□□□ -0.47
LIG1-208ENST00000595758 KRT74Q7RTS7 529 aa12.12□□□□□ -0.47
LIG1-208ENST00000595758 PEG10Q86TG7 708 aaKnown RBP12.12□□□□□ -0.47
LIG1-208ENST00000595758 ZDHHC23Q8IYP9 409 aa12.12□□□□□ -0.47
LIG1-208ENST00000595758 CCDC54Q8NEL0 328 aa12.12□□□□□ -0.47
LIG1-208ENST00000595758 ZNF420Q8TAQ5 688 aaPredicted RBP12.12□□□□□ -0.47
LIG1-208ENST00000595758 OR5P3Q8WZ94 311 aa12.12□□□□□ -0.47
LIG1-208ENST00000595758 ERGIC1Q969X5 290 aa12.12□□□□□ -0.47
LIG1-208ENST00000595758 CNBD2Q96M20 576 aa12.12□□□□□ -0.47
LIG1-208ENST00000595758 HIST1H2AAQ96QV6 131 aa12.12□□□□□ -0.47
LIG1-208ENST00000595758 MICU1Q9BPX6 476 aa12.12□□□□□ -0.47
LIG1-208ENST00000595758 FN3KRPQ9HA64 309 aa12.12□□□□□ -0.47
LIG1-208ENST00000595758 UFSP2Q9NUQ7 469 aa12.12□□□□□ -0.47
LIG1-208ENST00000595758 DCAF16Q9NXF7 216 aa12.12□□□□□ -0.47
LIG1-208ENST00000595758 V9GYS6 101 aa12.12□□□□□ -0.47
LIG1-208ENST00000595758 CSPG4Q6UVK1 2322 aa12.11□□□□□ -0.47
LIG1-208ENST00000595758 DYSFO75923 2080 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms