RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 NUP50Q9UKX7 468 aa8.79□□□□□ -1
LIG3-212ENST00000590181 ORC6Q9Y5N6 252 aa8.79□□□□□ -1
LIG3-212ENST00000590181 ARHGAP32A7KAX9 2087 aa8.79□□□□□ -1
LIG3-212ENST00000590181 hCG_38984A0A1B0GV85 526 aa8.78□□□□□ -1
LIG3-212ENST00000590181 SNTNA6NMZ2 147 aa8.78□□□□□ -1
LIG3-212ENST00000590181 ZAR1LA6NP61 321 aa8.78□□□□□ -1
LIG3-212ENST00000590181 H0YL77 283 aa8.78□□□□□ -1
LIG3-212ENST00000590181 ENSAO43768 121 aaKnown RBP8.78□□□□□ -1
LIG3-212ENST00000590181 FAM20BO75063 409 aa8.78□□□□□ -1
LIG3-212ENST00000590181 FSHBP01225 129 aa8.78□□□□□ -1
LIG3-212ENST00000590181 HLA-DPB1P04440 258 aa8.78□□□□□ -1
LIG3-212ENST00000590181 MTNR1AP48039 350 aa8.78□□□□□ -1
LIG3-212ENST00000590181 PITPNBP48739 271 aa8.78□□□□□ -1
LIG3-212ENST00000590181 ERFP50548 548 aa8.78□□□□□ -1
LIG3-212ENST00000590181 DAPP51397 102 aa8.78□□□□□ -1
LIG3-212ENST00000590181 ZNF121P58317 390 aaPredicted RBP8.78□□□□□ -1
LIG3-212ENST00000590181 EGR3Q06889 387 aa8.78□□□□□ -1
LIG3-212ENST00000590181 APOFQ13790 326 aa8.78□□□□□ -1
LIG3-212ENST00000590181 ARMCX4Q5H9R4 360 aa8.78□□□□□ -1
LIG3-212ENST00000590181 SLX4IPQ5VYV7 408 aa8.78□□□□□ -1
LIG3-212ENST00000590181 TEX36Q5VZQ5 186 aa8.78□□□□□ -1
LIG3-212ENST00000590181 C9orf139Q6ZV77 190 aa8.78□□□□□ -1
LIG3-212ENST00000590181 IQCF1Q8N6M8 205 aa8.78□□□□□ -1
LIG3-212ENST00000590181 PNLDC1Q8NA58 520 aaKnown RBP8.78□□□□□ -1
LIG3-212ENST00000590181 OR56B2PQ8NGI1 322 aa8.78□□□□□ -1
LIG3-212ENST00000590181 OR8J1Q8NGP2 316 aa8.78□□□□□ -1
LIG3-212ENST00000590181 OR2AE1Q8NHA4 323 aa8.78□□□□□ -1
LIG3-212ENST00000590181 TMEM163Q8TC26 289 aa8.78□□□□□ -1
LIG3-212ENST00000590181 GCDHQ92947 438 aaPredicted RBP8.78□□□□□ -1
LIG3-212ENST00000590181 RBM4BQ9BQ04 359 aaKnown RBP8.78□□□□□ -1
LIG3-212ENST00000590181 TLNRD1Q9H1K6 362 aa8.78□□□□□ -1
LIG3-212ENST00000590181 MED20Q9H944 212 aa8.78□□□□□ -1
LIG3-212ENST00000590181 WARS2Q9UGM6 360 aaKnown RBP8.78□□□□□ -1
LIG3-212ENST00000590181 VWFP04275 2813 aa8.78□□□□□ -1
LIG3-212ENST00000590181 LOC105371242A0A075B767 164 aa8.77□□□□□ -1.01
LIG3-212ENST00000590181 TMEM269A0A1B0GVZ9 245 aa8.77□□□□□ -1.01
LIG3-212ENST00000590181 OOEPA6NGQ2 149 aa8.77□□□□□ -1.01
LIG3-212ENST00000590181 CYB5R3P00387 301 aaPredicted RBP8.77□□□□□ -1.01
LIG3-212ENST00000590181 ZFP36P26651 326 aaKnown RBP8.77□□□□□ -1.01
LIG3-212ENST00000590181 PMELP40967 661 aa8.77□□□□□ -1.01
LIG3-212ENST00000590181 RPS27P42677 84 aaKnown RBP8.77□□□□□ -1.01
LIG3-212ENST00000590181 RIDAP52758 137 aaKnown RBP8.77□□□□□ -1.01
LIG3-212ENST00000590181 PAX2Q02962 417 aa8.77□□□□□ -1.01
LIG3-212ENST00000590181 RIPPLY1Q0D2K3 151 aa8.77□□□□□ -1.01
LIG3-212ENST00000590181 TUSC1Q2TAM9 212 aa8.77□□□□□ -1.01
LIG3-212ENST00000590181 SPRNQ5BIV9 151 aa8.77□□□□□ -1.01
LIG3-212ENST00000590181 SLC25A30Q5SVS4 291 aa8.77□□□□□ -1.01
LIG3-212ENST00000590181 ATPAF1Q5TC12 328 aaPredicted RBP8.77□□□□□ -1.01
LIG3-212ENST00000590181 C12orf73Q69YU5 71 aa8.77□□□□□ -1.01
LIG3-212ENST00000590181 CCDC121Q6ZUS5 278 aa8.77□□□□□ -1.01
LIG3-212ENST00000590181 FAM57BQ71RH2 274 aa8.77□□□□□ -1.01
LIG3-212ENST00000590181 ASRGL1Q7L266 308 aa8.77□□□□□ -1.01
LIG3-212ENST00000590181 SLC36A1Q7Z2H8 476 aa8.77□□□□□ -1.01
LIG3-212ENST00000590181 KCTD20Q7Z5Y7 419 aa8.77□□□□□ -1.01
LIG3-212ENST00000590181 DEFB108BQ8NET1 73 aa8.77□□□□□ -1.01
LIG3-212ENST00000590181 OR5A2Q8NGI9 324 aa8.77□□□□□ -1.01
LIG3-212ENST00000590181 ZNF420Q8TAQ5 688 aaPredicted RBP8.77□□□□□ -1.01
LIG3-212ENST00000590181 MED30Q96HR3 178 aa8.77□□□□□ -1.01
LIG3-212ENST00000590181 CNN2Q99439 309 aaKnown RBP8.77□□□□□ -1.01
LIG3-212ENST00000590181 CLN6Q9NWW5 311 aa8.77□□□□□ -1.01
LIG3-212ENST00000590181 OPN4Q9UHM6 478 aa8.77□□□□□ -1.01
LIG3-212ENST00000590181 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP8.77□□□□□ -1.01
LIG3-212ENST00000590181 PCDHGB1Q9Y5G3 927 aa8.77□□□□□ -1.01
LIG3-212ENST00000590181 IGHV2-70DA0A0C4DH43 119 aa8.76□□□□□ -1.01
LIG3-212ENST00000590181 ZNF816-ZNF321PA0A0X1KG74 233 aa8.76□□□□□ -1.01
LIG3-212ENST00000590181 TMEM89A2RUT3 159 aa8.76□□□□□ -1.01
LIG3-212ENST00000590181 OR5B21A6NL26 309 aa8.76□□□□□ -1.01
LIG3-212ENST00000590181 TRAPPC2LH3BP13 241 aa8.76□□□□□ -1.01
LIG3-212ENST00000590181 CLDN34H7C241 214 aa8.76□□□□□ -1.01
LIG3-212ENST00000590181 TNFRSF13BO14836 293 aaPredicted RBP8.76□□□□□ -1.01
LIG3-212ENST00000590181 SULT1C4O75897 302 aa8.76□□□□□ -1.01
LIG3-212ENST00000590181 OR2T7P0C7T2 308 aa8.76□□□□□ -1.01
LIG3-212ENST00000590181 SLC2A1P11166 492 aa8.76□□□□□ -1.01
LIG3-212ENST00000590181 CDC42P60953 191 aa8.76□□□□□ -1.01
LIG3-212ENST00000590181 CEACAM21Q3KPI0 293 aa8.76□□□□□ -1.01
LIG3-212ENST00000590181 PDLIM3Q53GG5 364 aaPredicted RBP8.76□□□□□ -1.01
LIG3-212ENST00000590181 AADACL4Q5VUY2 407 aa8.76□□□□□ -1.01
LIG3-212ENST00000590181 MEDAGQ5VYS4 303 aa8.76□□□□□ -1.01
LIG3-212ENST00000590181 WDR25Q64LD2 544 aaPredicted RBP8.76□□□□□ -1.01
LIG3-212ENST00000590181 LYPD4Q6UWN0 246 aa8.76□□□□□ -1.01
LIG3-212ENST00000590181 C1orf229Q6ZS94 237 aaPredicted RBP8.76□□□□□ -1.01
LIG3-212ENST00000590181 HS3ST5Q8IZT8 346 aa8.76□□□□□ -1.01
LIG3-212ENST00000590181 OR1M1Q8NGA1 313 aa8.76□□□□□ -1.01
LIG3-212ENST00000590181 OR2T27Q8NH04 317 aa8.76□□□□□ -1.01
LIG3-212ENST00000590181 ZNF671Q8TAW3 534 aa8.76□□□□□ -1.01
LIG3-212ENST00000590181 DVL3Q92997 716 aaPredicted RBP8.76□□□□□ -1.01
LIG3-212ENST00000590181 DACT3Q96B18 629 aaPredicted RBP8.76□□□□□ -1.01
LIG3-212ENST00000590181 UPRTQ96BW1 309 aa8.76□□□□□ -1.01
LIG3-212ENST00000590181 C10orf35Q96D05 121 aa8.76□□□□□ -1.01
LIG3-212ENST00000590181 ITPKCQ96DU7 683 aa8.76□□□□□ -1.01
LIG3-212ENST00000590181 TECTBQ96PL2 329 aa8.76□□□□□ -1.01
LIG3-212ENST00000590181 GABARAPL3Q9BY60 117 aa8.76□□□□□ -1.01
LIG3-212ENST00000590181 C1orf123Q9NWV4 160 aa8.76□□□□□ -1.01
LIG3-212ENST00000590181 RASL12Q9NYN1 266 aa8.76□□□□□ -1.01
LIG3-212ENST00000590181 NUFIP1Q9UHK0 495 aaKnown RBP8.76□□□□□ -1.01
LIG3-212ENST00000590181 LRP12Q9Y561 859 aa8.76□□□□□ -1.01
LIG3-212ENST00000590181 SNX5Q9Y5X3 404 aa8.76□□□□□ -1.01
LIG3-212ENST00000590181 A6NLC8 198 aa8.75□□□□□ -1.01
LIG3-212ENST00000590181 ZNF670-ZNF695F2Z2N8 137 aa8.75□□□□□ -1.01
LIG3-212ENST00000590181 P2RY10O00398 339 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms