RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 C16orf82Q7Z2V1 217 aa14.39□□□□□ -0.11
CLK3-227ENST00000570296 FAM122BQ7Z309 247 aa14.39□□□□□ -0.11
CLK3-227ENST00000570296 MICU2Q8IYU8 434 aa14.39□□□□□ -0.11
CLK3-227ENST00000570296 OR56B2PQ8NGI1 322 aa14.39□□□□□ -0.11
CLK3-227ENST00000570296 OR2AE1Q8NHA4 323 aa14.39□□□□□ -0.11
CLK3-227ENST00000570296 PITX2Q99697 317 aa14.39□□□□□ -0.11
CLK3-227ENST00000570296 TLNRD1Q9H1K6 362 aa14.39□□□□□ -0.11
CLK3-227ENST00000570296 ELL3Q9HB65 397 aaPredicted RBP14.39□□□□□ -0.11
CLK3-227ENST00000570296 SNTG1Q9NSN8 517 aa14.39□□□□□ -0.11
CLK3-227ENST00000570296 VSX1Q9NZR4 365 aaPredicted RBP14.39□□□□□ -0.11
CLK3-227ENST00000570296 SLC9A3P48764 834 aa14.38□□□□□ -0.11
CLK3-227ENST00000570296 LUMP51884 338 aaPredicted RBP14.38□□□□□ -0.11
CLK3-227ENST00000570296 SLC25A1P53007 311 aa14.38□□□□□ -0.11
CLK3-227ENST00000570296 WDR4P57081 412 aaKnown RBP14.38□□□□□ -0.11
CLK3-227ENST00000570296 MXRA7P84157 204 aa14.38□□□□□ -0.11
CLK3-227ENST00000570296 KRR1Q13601 381 aaKnown RBP14.38□□□□□ -0.11
CLK3-227ENST00000570296 SSX2Q16385 188 aa14.38□□□□□ -0.11
CLK3-227ENST00000570296 MEP1BQ16820 701 aa14.38□□□□□ -0.11
CLK3-227ENST00000570296 CYP51A1Q16850 503 aa14.38□□□□□ -0.11
CLK3-227ENST00000570296 CFAP77Q6ZQR2 320 aa14.38□□□□□ -0.11
CLK3-227ENST00000570296 C11orf42Q8N5U0 333 aa14.38□□□□□ -0.11
CLK3-227ENST00000570296 OR10Z1Q8NGY1 313 aa14.38□□□□□ -0.11
CLK3-227ENST00000570296 PARD6BQ9BYG5 372 aa14.38□□□□□ -0.11
CLK3-227ENST00000570296 WDR13Q9H1Z4 485 aa14.38□□□□□ -0.11
CLK3-227ENST00000570296 OPA3Q9H6K4 179 aa14.38□□□□□ -0.11
CLK3-227ENST00000570296 NMNAT1Q9HAN9 279 aaPredicted RBP14.38□□□□□ -0.11
CLK3-227ENST00000570296 ANKRD30BLA7E2S9 258 aa14.37□□□□□ -0.11
CLK3-227ENST00000570296 M0R135 149 aa14.37□□□□□ -0.11
CLK3-227ENST00000570296 CDIPTO14735 213 aa14.37□□□□□ -0.11
CLK3-227ENST00000570296 MDH1P40925 334 aaKnown RBP14.37□□□□□ -0.11
CLK3-227ENST00000570296 CEBPDP49716 269 aaPredicted RBP14.37□□□□□ -0.11
CLK3-227ENST00000570296 ERVFRD-1P60508 538 aa14.37□□□□□ -0.11
CLK3-227ENST00000570296 SNAI3Q3KNW1 292 aa14.37□□□□□ -0.11
CLK3-227ENST00000570296 PAGE3Q5JUK9 113 aa14.37□□□□□ -0.11
CLK3-227ENST00000570296 C9orf66Q5T8R8 295 aa14.37□□□□□ -0.11
CLK3-227ENST00000570296 SLC18B1Q6NT16 456 aa14.37□□□□□ -0.11
CLK3-227ENST00000570296 C8orf86Q6ZUL3 223 aa14.37□□□□□ -0.11
CLK3-227ENST00000570296 OR2W3Q7Z3T1 314 aa14.37□□□□□ -0.11
CLK3-227ENST00000570296 KRT77Q7Z794 578 aa14.37□□□□□ -0.11
CLK3-227ENST00000570296 ZSCAN2Q7Z7L9 614 aaPredicted RBP14.37□□□□□ -0.11
CLK3-227ENST00000570296 OSR2Q8N2R0 312 aa14.37□□□□□ -0.11
CLK3-227ENST00000570296 ZNF799Q96GE5 643 aa14.37□□□□□ -0.11
CLK3-227ENST00000570296 AKR1E2Q96JD6 320 aa14.37□□□□□ -0.11
CLK3-227ENST00000570296 NUAK2Q9H093 628 aa14.37□□□□□ -0.11
CLK3-227ENST00000570296 C19orf12Q9NSK7 152 aa14.37□□□□□ -0.11
CLK3-227ENST00000570296 SH3GLB1Q9Y371 365 aa14.37□□□□□ -0.11
CLK3-227ENST00000570296 FAM90A22PA8MWA6 464 aa14.36□□□□□ -0.11
CLK3-227ENST00000570296 ODF3BA8MYP8 253 aa14.36□□□□□ -0.11
CLK3-227ENST00000570296 EFCAB9A8MZ26 197 aa14.36□□□□□ -0.11
CLK3-227ENST00000570296 TFF1P04155 84 aa14.36□□□□□ -0.11
CLK3-227ENST00000570296 DDOSTP39656 456 aa14.36□□□□□ -0.11
CLK3-227ENST00000570296 GMFBP60983 142 aa14.36□□□□□ -0.11
CLK3-227ENST00000570296 SELPLGQ14242 412 aa14.36□□□□□ -0.11
CLK3-227ENST00000570296 RFX4Q33E94 735 aa14.36□□□□□ -0.11
CLK3-227ENST00000570296 GLYATL3Q5SZD4 288 aa14.36□□□□□ -0.11
CLK3-227ENST00000570296 BLOC1S3Q6QNY0 202 aa14.36□□□□□ -0.11
CLK3-227ENST00000570296 CPLX4Q7Z7G2 160 aa14.36□□□□□ -0.11
CLK3-227ENST00000570296 ADCK1Q86TW2 530 aa14.36□□□□□ -0.11
CLK3-227ENST00000570296 LNX2Q8N448 690 aa14.36□□□□□ -0.11
CLK3-227ENST00000570296 OR13C2Q8NGS9 318 aa14.36□□□□□ -0.11
CLK3-227ENST00000570296 LYZL4Q96KX0 146 aa14.36□□□□□ -0.11
CLK3-227ENST00000570296 NDEL1Q9GZM8 345 aa14.36□□□□□ -0.11
CLK3-227ENST00000570296 EDA2RQ9HAV5 297 aa14.36□□□□□ -0.11
CLK3-227ENST00000570296 PNRC2Q9NPJ4 139 aaKnown RBP14.36□□□□□ -0.11
CLK3-227ENST00000570296 USE1Q9NZ43 259 aa14.36□□□□□ -0.11
CLK3-227ENST00000570296 ZNF256Q9Y2P7 627 aaPredicted RBP14.36□□□□□ -0.11
CLK3-227ENST00000570296 KIAA1109Q2LD37 5005 aa14.36□□□□□ -0.11
CLK3-227ENST00000570296 LPLP06858 475 aa14.35□□□□□ -0.11
CLK3-227ENST00000570296 MRPL19P49406 292 aaKnown RBP14.35□□□□□ -0.11
CLK3-227ENST00000570296 CRYBA2P53672 197 aa14.35□□□□□ -0.11
CLK3-227ENST00000570296 NRMQ8IXM6 262 aa14.35□□□□□ -0.11
CLK3-227ENST00000570296 CYB561A3Q8NBI2 242 aa14.35□□□□□ -0.11
CLK3-227ENST00000570296 TMEM185AQ8NFB2 350 aa14.35□□□□□ -0.11
CLK3-227ENST00000570296 SLC26A10Q8NG04 563 aa14.35□□□□□ -0.11
CLK3-227ENST00000570296 SPTSSAQ969W0 71 aa14.35□□□□□ -0.11
CLK3-227ENST00000570296 SPDL1Q96EA4 605 aa14.35□□□□□ -0.11
CLK3-227ENST00000570296 LIN7BQ9HAP6 207 aa14.35□□□□□ -0.11
CLK3-227ENST00000570296 VNN3Q9NY84 501 aa14.35□□□□□ -0.11
CLK3-227ENST00000570296 RAB21Q9UL25 225 aa14.35□□□□□ -0.11
CLK3-227ENST00000570296 OR2AT4A6NND4 320 aa14.34□□□□□ -0.11
CLK3-227ENST00000570296 NUDT19A8MXV4 375 aa14.34□□□□□ -0.11
CLK3-227ENST00000570296 ARG1P05089 322 aa14.34□□□□□ -0.11
CLK3-227ENST00000570296 KITP10721 976 aa14.34□□□□□ -0.11
CLK3-227ENST00000570296 CRABP1P29762 137 aa14.34□□□□□ -0.11
CLK3-227ENST00000570296 CENPAP49450 140 aa14.34□□□□□ -0.11
CLK3-227ENST00000570296 VEGFCP49767 419 aa14.34□□□□□ -0.11
CLK3-227ENST00000570296 OR12D2P58182 307 aa14.34□□□□□ -0.11
CLK3-227ENST00000570296 PRKCDQ05655 676 aa14.34□□□□□ -0.11
CLK3-227ENST00000570296 ST3GAL3Q11203 375 aa14.34□□□□□ -0.11
CLK3-227ENST00000570296 MPP2Q14168 576 aa14.34□□□□□ -0.11
CLK3-227ENST00000570296 LDLRAD2Q5SZI1 272 aa14.34□□□□□ -0.11
CLK3-227ENST00000570296 GPR139Q6DWJ6 353 aa14.34□□□□□ -0.11
CLK3-227ENST00000570296 DNM1P34Q6PK57 102 aa14.34□□□□□ -0.11
CLK3-227ENST00000570296 LINC00346Q8IVM7 164 aa14.34□□□□□ -0.11
CLK3-227ENST00000570296 FUNDC1Q8IVP5 155 aa14.34□□□□□ -0.11
CLK3-227ENST00000570296 ZNRF1Q8ND25 227 aa14.34□□□□□ -0.11
CLK3-227ENST00000570296 OR2AJ1Q8NGZ0 328 aa14.34□□□□□ -0.11
CLK3-227ENST00000570296 OR52B2Q96RD2 323 aa14.34□□□□□ -0.11
CLK3-227ENST00000570296 ZFP57Q9NU63 452 aa14.34□□□□□ -0.11
CLK3-227ENST00000570296 NLKQ9UBE8 527 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms