RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 LHFPL3Q86UP9 236 aa11.66□□□□□ -0.54
CLN3-235ENST00000568497 ZNF679Q8IYX0 411 aa11.66□□□□□ -0.54
CLN3-235ENST00000568497 OR13G1Q8NGZ3 307 aa11.66□□□□□ -0.54
CLN3-235ENST00000568497 RHOXF1Q8NHV9 184 aa11.66□□□□□ -0.54
CLN3-235ENST00000568497 RNF166Q96A37 237 aaPredicted RBP11.66□□□□□ -0.54
CLN3-235ENST00000568497 SEH1LQ96EE3 360 aa11.66□□□□□ -0.54
CLN3-235ENST00000568497 G6PC2Q9NQR9 355 aa11.66□□□□□ -0.54
CLN3-235ENST00000568497 GPR84Q9NQS5 396 aa11.66□□□□□ -0.54
CLN3-235ENST00000568497 HIF1ANQ9NWT6 349 aa11.66□□□□□ -0.54
CLN3-235ENST00000568497 GNG8Q9UK08 70 aa11.66□□□□□ -0.54
CLN3-235ENST00000568497 ZNF850A8MQ14 1090 aa11.65□□□□□ -0.54
CLN3-235ENST00000568497 B4DSR2 109 aa11.65□□□□□ -0.54
CLN3-235ENST00000568497 TTRP02766 147 aa11.65□□□□□ -0.54
CLN3-235ENST00000568497 CD55P08174 381 aa11.65□□□□□ -0.54
CLN3-235ENST00000568497 DBTP11182 482 aaKnown RBP11.65□□□□□ -0.54
CLN3-235ENST00000568497 CD80P33681 288 aa11.65□□□□□ -0.54
CLN3-235ENST00000568497 MTNR1AP48039 350 aa11.65□□□□□ -0.54
CLN3-235ENST00000568497 AQP4P55087 323 aa11.65□□□□□ -0.54
CLN3-235ENST00000568497 OR12D2P58182 307 aa11.65□□□□□ -0.54
CLN3-235ENST00000568497 SEC61A1P61619 476 aaKnown RBP11.65□□□□□ -0.54
CLN3-235ENST00000568497 CSNK2BP67870 215 aa11.65□□□□□ -0.54
CLN3-235ENST00000568497 ADARB1P78563 741 aaKnown RBP11.65□□□□□ -0.54
CLN3-235ENST00000568497 OCLNQ16625 522 aa11.65□□□□□ -0.54
CLN3-235ENST00000568497 HFEQ30201 348 aa11.65□□□□□ -0.54
CLN3-235ENST00000568497 CEP78Q5JTW2 689 aa11.65□□□□□ -0.54
CLN3-235ENST00000568497 FAM209AQ5JX71 171 aa11.65□□□□□ -0.54
CLN3-235ENST00000568497 ZNF691Q5VV52 312 aa11.65□□□□□ -0.54
CLN3-235ENST00000568497 LAIR2Q6ISS4 152 aa11.65□□□□□ -0.54
CLN3-235ENST00000568497 BATF2Q8N1L9 274 aa11.65□□□□□ -0.54
CLN3-235ENST00000568497 ZNF555Q8NEP9 628 aa11.65□□□□□ -0.54
CLN3-235ENST00000568497 DEFB108BQ8NET1 73 aa11.65□□□□□ -0.54
CLN3-235ENST00000568497 PIGCQ92535 297 aa11.65□□□□□ -0.54
CLN3-235ENST00000568497 SPSB4Q96A44 273 aa11.65□□□□□ -0.54
CLN3-235ENST00000568497 COG8Q96MW5 612 aa11.65□□□□□ -0.54
CLN3-235ENST00000568497 SUCNR1Q9BXA5 334 aa11.65□□□□□ -0.54
CLN3-235ENST00000568497 MROQ9BYG7 248 aa11.65□□□□□ -0.54
CLN3-235ENST00000568497 EGLN1Q9GZT9 426 aa11.65□□□□□ -0.54
CLN3-235ENST00000568497 NIPAL2Q9H841 368 aa11.65□□□□□ -0.54
CLN3-235ENST00000568497 ISG20L2Q9H9L3 353 aaKnown RBP11.65□□□□□ -0.54
CLN3-235ENST00000568497 GCM1Q9NP62 436 aa11.65□□□□□ -0.54
CLN3-235ENST00000568497 CYSLTR2Q9NS75 346 aa11.65□□□□□ -0.54
CLN3-235ENST00000568497 TMEM106BQ9NUM4 274 aa11.65□□□□□ -0.54
CLN3-235ENST00000568497 HAO2Q9NYQ3 351 aa11.65□□□□□ -0.54
CLN3-235ENST00000568497 NKIRAS2Q9NYR9 191 aa11.65□□□□□ -0.54
CLN3-235ENST00000568497 ZDHHC8Q9ULC8 765 aa11.65□□□□□ -0.54
CLN3-235ENST00000568497 WNK2Q9Y3S1 2297 aa11.65□□□□□ -0.55
CLN3-235ENST00000568497 IGHV3OR15-7A0A075B7D8 119 aa11.64□□□□□ -0.55
CLN3-235ENST00000568497 CLDN25C9JDP6 229 aa11.64□□□□□ -0.55
CLN3-235ENST00000568497 LOC110117498-PIK3R3F6TDL0 507 aa11.64□□□□□ -0.55
CLN3-235ENST00000568497 J3QRE1 110 aa11.64□□□□□ -0.55
CLN3-235ENST00000568497 CASQ2O14958 399 aaPredicted RBP11.64□□□□□ -0.55
CLN3-235ENST00000568497 SLC16A6O15403 523 aa11.64□□□□□ -0.55
CLN3-235ENST00000568497 XRCC2O43543 280 aa11.64□□□□□ -0.55
CLN3-235ENST00000568497 FAM20BO75063 409 aa11.64□□□□□ -0.55
CLN3-235ENST00000568497 FAHP16930 419 aa11.64□□□□□ -0.55
CLN3-235ENST00000568497 KIR3DL2P43630 455 aa11.64□□□□□ -0.55
CLN3-235ENST00000568497 ROM1Q03395 351 aa11.64□□□□□ -0.55
CLN3-235ENST00000568497 SLC34A1Q06495 639 aa11.64□□□□□ -0.55
CLN3-235ENST00000568497 ZMYND11Q15326 602 aa11.64□□□□□ -0.55
CLN3-235ENST00000568497 ZNF684Q5T5D7 378 aa11.64□□□□□ -0.55
CLN3-235ENST00000568497 SFRP4Q6FHJ7 346 aaPredicted RBP11.64□□□□□ -0.55
CLN3-235ENST00000568497 KCTD18Q6PI47 426 aaPredicted RBP11.64□□□□□ -0.55
CLN3-235ENST00000568497 PRSS35Q8N3Z0 413 aa11.64□□□□□ -0.55
CLN3-235ENST00000568497 OR52I1Q8NGK6 324 aa11.64□□□□□ -0.55
CLN3-235ENST00000568497 RORBQ92753 470 aa11.64□□□□□ -0.55
CLN3-235ENST00000568497 TMEM186Q96B77 213 aa11.64□□□□□ -0.55
CLN3-235ENST00000568497 ADI1Q9BV57 179 aa11.64□□□□□ -0.55
CLN3-235ENST00000568497 PAPOLGQ9BWT3 736 aaKnown RBP11.64□□□□□ -0.55
CLN3-235ENST00000568497 OR52A1Q9UKL2 312 aa11.64□□□□□ -0.55
CLN3-235ENST00000568497 PPP1R3CQ9UQK1 317 aa11.64□□□□□ -0.55
CLN3-235ENST00000568497 R4GMQ9 66 aa11.64□□□□□ -0.55
CLN3-235ENST00000568497 VWFP04275 2813 aa11.64□□□□□ -0.55
CLN3-235ENST00000568497 A0A1B0GTI1 187 aa11.63□□□□□ -0.55
CLN3-235ENST00000568497 METTL15A6NJ78 407 aa11.63□□□□□ -0.55
CLN3-235ENST00000568497 A6NLC8 198 aa11.63□□□□□ -0.55
CLN3-235ENST00000568497 E9PI62 339 aa11.63□□□□□ -0.55
CLN3-235ENST00000568497 J3QLW9 94 aa11.63□□□□□ -0.55
CLN3-235ENST00000568497 KRT8P05787 483 aa11.63□□□□□ -0.55
CLN3-235ENST00000568497 ADH4P08319 380 aa11.63□□□□□ -0.55
CLN3-235ENST00000568497 OR2T7P0C7T2 308 aa11.63□□□□□ -0.55
CLN3-235ENST00000568497 ZNF19P17023 458 aa11.63□□□□□ -0.55
CLN3-235ENST00000568497 TNFSF4P23510 183 aa11.63□□□□□ -0.55
CLN3-235ENST00000568497 NANOS3P60323 173 aaKnown RBP11.63□□□□□ -0.55
CLN3-235ENST00000568497 LMO4P61968 165 aa11.63□□□□□ -0.55
CLN3-235ENST00000568497 PRDX4Q13162 271 aa11.63□□□□□ -0.55
CLN3-235ENST00000568497 DOC2BQ14184 412 aa11.63□□□□□ -0.55
CLN3-235ENST00000568497 WDR38Q5JTN6 314 aa11.63□□□□□ -0.55
CLN3-235ENST00000568497 BCL2L15Q5TBC7 163 aa11.63□□□□□ -0.55
CLN3-235ENST00000568497 FAHD2BQ6P2I3 314 aaPredicted RBP11.63□□□□□ -0.55
CLN3-235ENST00000568497 C1orf174Q8IYL3 243 aa11.63□□□□□ -0.55
CLN3-235ENST00000568497 DHRSXQ8N5I4 330 aa11.63□□□□□ -0.55
CLN3-235ENST00000568497 OR2T27Q8NH04 317 aa11.63□□□□□ -0.55
CLN3-235ENST00000568497 OR10AC1Q8NH08 325 aa11.63□□□□□ -0.55
CLN3-235ENST00000568497 TRUB1Q8WWH5 349 aaKnown RBP11.63□□□□□ -0.55
CLN3-235ENST00000568497 ASB17Q8WXJ9 295 aa11.63□□□□□ -0.55
CLN3-235ENST00000568497 SGCDQ92629 289 aa11.63□□□□□ -0.55
CLN3-235ENST00000568497 FAHD2AQ96GK7 314 aa11.63□□□□□ -0.55
CLN3-235ENST00000568497 RNPEPL1Q9HAU8 725 aa11.63□□□□□ -0.55
CLN3-235ENST00000568497 GPR173Q9NS66 373 aa11.63□□□□□ -0.55
CLN3-235ENST00000568497 C1orf123Q9NWV4 160 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms