RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 ZNF570Q96NI8 536 aa9.42□□□□□ -0.9
CLK3-222ENST00000568232 PITX2Q99697 317 aa9.42□□□□□ -0.9
CLK3-222ENST00000568232 TMEM109Q9BVC6 243 aa9.42□□□□□ -0.9
CLK3-222ENST00000568232 ROPN1BQ9BZX4 212 aaPredicted RBP9.42□□□□□ -0.9
CLK3-222ENST00000568232 PPP1R3EQ9H7J1 279 aa9.42□□□□□ -0.9
CLK3-222ENST00000568232 ROPN1Q9HAT0 212 aaPredicted RBP9.42□□□□□ -0.9
CLK3-222ENST00000568232 C14orf119Q9NWQ9 140 aa9.42□□□□□ -0.9
CLK3-222ENST00000568232 HAO2Q9NYQ3 351 aa9.42□□□□□ -0.9
CLK3-222ENST00000568232 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.41□□□□□ -0.9
CLK3-222ENST00000568232 EFCAB9A8MZ26 197 aa9.41□□□□□ -0.9
CLK3-222ENST00000568232 HMGB1P1B2RPK0 211 aaPredicted RBP9.41□□□□□ -0.9
CLK3-222ENST00000568232 F2RL2O00254 374 aa9.41□□□□□ -0.9
CLK3-222ENST00000568232 DCTN6O00399 190 aa9.41□□□□□ -0.9
CLK3-222ENST00000568232 CDIPTO14735 213 aa9.41□□□□□ -0.9
CLK3-222ENST00000568232 AHCYL1O43865 530 aa9.41□□□□□ -0.9
CLK3-222ENST00000568232 SNNO75324 88 aaPredicted RBP9.41□□□□□ -0.9
CLK3-222ENST00000568232 CD14P08571 375 aa9.41□□□□□ -0.9
CLK3-222ENST00000568232 GRK5P34947 590 aa9.41□□□□□ -0.9
CLK3-222ENST00000568232 IL5RAQ01344 420 aa9.41□□□□□ -0.9
CLK3-222ENST00000568232 KRR1Q13601 381 aaKnown RBP9.41□□□□□ -0.9
CLK3-222ENST00000568232 KRT71Q3SY84 523 aa9.41□□□□□ -0.9
CLK3-222ENST00000568232 TNFAIP8L3Q5GJ75 292 aa9.41□□□□□ -0.9
CLK3-222ENST00000568232 GLYATL3Q5SZD4 288 aa9.41□□□□□ -0.9
CLK3-222ENST00000568232 ZNF788Q6ZQV5 615 aa9.41□□□□□ -0.9
CLK3-222ENST00000568232 PTCHD4Q6ZW05 846 aa9.41□□□□□ -0.9
CLK3-222ENST00000568232 DPY19L4Q7Z388 723 aa9.41□□□□□ -0.9
CLK3-222ENST00000568232 TSEN54Q7Z6J9 526 aaKnown RBP9.41□□□□□ -0.9
CLK3-222ENST00000568232 OR1M1Q8NGA1 313 aa9.41□□□□□ -0.9
CLK3-222ENST00000568232 OR56B2PQ8NGI1 322 aa9.41□□□□□ -0.9
CLK3-222ENST00000568232 C12orf43Q96C57 262 aaKnown RBP9.41□□□□□ -0.9
CLK3-222ENST00000568232 LYZL4Q96KX0 146 aa9.41□□□□□ -0.9
CLK3-222ENST00000568232 RCHY1Q96PM5 261 aa9.41□□□□□ -0.9
CLK3-222ENST00000568232 ATF6BQ99941 703 aa9.41□□□□□ -0.9
CLK3-222ENST00000568232 ZNF649Q9BS31 505 aa9.41□□□□□ -0.9
CLK3-222ENST00000568232 NMNAT1Q9HAN9 279 aaPredicted RBP9.41□□□□□ -0.9
CLK3-222ENST00000568232 ABCB10Q9NRK6 738 aa9.41□□□□□ -0.9
CLK3-222ENST00000568232 THAP1Q9NVV9 213 aa9.41□□□□□ -0.9
CLK3-222ENST00000568232 NKX1-2Q9UD57 310 aaPredicted RBP9.41□□□□□ -0.9
CLK3-222ENST00000568232 FAM90A8PA6NJQ4 464 aa9.4□□□□□ -0.9
CLK3-222ENST00000568232 SOCS2O14508 198 aa9.4□□□□□ -0.9
CLK3-222ENST00000568232 CDC42EP2O14613 210 aa9.4□□□□□ -0.9
CLK3-222ENST00000568232 ALDOBP05062 364 aa9.4□□□□□ -0.9
CLK3-222ENST00000568232 PAICSP22234 425 aaKnown RBP9.4□□□□□ -0.9
CLK3-222ENST00000568232 MDH1P40925 334 aaKnown RBP9.4□□□□□ -0.9
CLK3-222ENST00000568232 PRKCDQ05655 676 aa9.4□□□□□ -0.9
CLK3-222ENST00000568232 LDLRAD2Q5SZI1 272 aa9.4□□□□□ -0.9
CLK3-222ENST00000568232 SLC18B1Q6NT16 456 aa9.4□□□□□ -0.9
CLK3-222ENST00000568232 C11orf42Q8N5U0 333 aa9.4□□□□□ -0.9
CLK3-222ENST00000568232 OR8S1Q8NH09 359 aa9.4□□□□□ -0.9
CLK3-222ENST00000568232 ANGPTL6Q8NI99 470 aa9.4□□□□□ -0.9
CLK3-222ENST00000568232 RPS4Y2Q8TD47 263 aa9.4□□□□□ -0.9
CLK3-222ENST00000568232 MCRIP2Q9BUT9 160 aaKnown RBP9.4□□□□□ -0.9
CLK3-222ENST00000568232 POLR2J2Q9GZM3 115 aaKnown RBP9.4□□□□□ -0.9
CLK3-222ENST00000568232 POLR2J3Q9H1A7 115 aaKnown RBP9.4□□□□□ -0.9
CLK3-222ENST00000568232 HEXA-AS1Q9H8Q6 139 aa9.4□□□□□ -0.9
CLK3-222ENST00000568232 KCNK9Q9NPC2 374 aa9.4□□□□□ -0.9
CLK3-222ENST00000568232 PNRC2Q9NPJ4 139 aaKnown RBP9.4□□□□□ -0.9
CLK3-222ENST00000568232 RHCGQ9UBD6 479 aa9.4□□□□□ -0.9
CLK3-222ENST00000568232 M0R135 149 aa9.39□□□□□ -0.91
CLK3-222ENST00000568232 SIGLEC5O15389 551 aa9.39□□□□□ -0.91
CLK3-222ENST00000568232 RHBDL1O75783 438 aa9.39□□□□□ -0.91
CLK3-222ENST00000568232 GLCEO94923 617 aa9.39□□□□□ -0.91
CLK3-222ENST00000568232 ACAA1P09110 424 aaPredicted RBP9.39□□□□□ -0.91
CLK3-222ENST00000568232 NAA10P41227 235 aaPredicted RBP9.39□□□□□ -0.91
CLK3-222ENST00000568232 CDKN2AP42771 156 aaKnown RBP9.39□□□□□ -0.91
CLK3-222ENST00000568232 GPR4P46093 362 aa9.39□□□□□ -0.91
CLK3-222ENST00000568232 THBS3P49746 956 aa9.39□□□□□ -0.91
CLK3-222ENST00000568232 TPTEP56180 551 aa9.39□□□□□ -0.91
CLK3-222ENST00000568232 CAV3P56539 151 aa9.39□□□□□ -0.91
CLK3-222ENST00000568232 STX1BP61266 288 aa9.39□□□□□ -0.91
CLK3-222ENST00000568232 MZT1Q08AG7 82 aa9.39□□□□□ -0.91
CLK3-222ENST00000568232 SSX2Q16385 188 aa9.39□□□□□ -0.91
CLK3-222ENST00000568232 RFX4Q33E94 735 aa9.39□□□□□ -0.91
CLK3-222ENST00000568232 TBPL2Q6SJ96 375 aa9.39□□□□□ -0.91
CLK3-222ENST00000568232 C18orf65Q6ZTR6 163 aa9.39□□□□□ -0.91
CLK3-222ENST00000568232 ZNRF1Q8ND25 227 aa9.39□□□□□ -0.91
CLK3-222ENST00000568232 OR4X2Q8NGF9 303 aa9.39□□□□□ -0.91
CLK3-222ENST00000568232 RASSF5Q8WWW0 418 aa9.39□□□□□ -0.91
CLK3-222ENST00000568232 ZNF799Q96GE5 643 aa9.39□□□□□ -0.91
CLK3-222ENST00000568232 MED30Q96HR3 178 aa9.39□□□□□ -0.91
CLK3-222ENST00000568232 RAB3IPQ96QF0 476 aaPredicted RBP9.39□□□□□ -0.91
CLK3-222ENST00000568232 KAT8Q9H7Z6 458 aaKnown RBP9.39□□□□□ -0.91
CLK3-222ENST00000568232 C19orf12Q9NSK7 152 aa9.39□□□□□ -0.91
CLK3-222ENST00000568232 PITPNC1Q9UKF7 332 aa9.39□□□□□ -0.91
CLK3-222ENST00000568232 A4GNTQ9UNA3 340 aa9.39□□□□□ -0.91
CLK3-222ENST00000568232 N6AMT1Q9Y5N5 214 aa9.39□□□□□ -0.91
CLK3-222ENST00000568232 AKR7A2O43488 359 aa9.38□□□□□ -0.91
CLK3-222ENST00000568232 RAMP3O60896 148 aa9.38□□□□□ -0.91
CLK3-222ENST00000568232 YAP1P46937 504 aaKnown RBP9.38□□□□□ -0.91
CLK3-222ENST00000568232 GABRA2P47869 451 aa9.38□□□□□ -0.91
CLK3-222ENST00000568232 MRPL19P49406 292 aaKnown RBP9.38□□□□□ -0.91
CLK3-222ENST00000568232 SLC18A1P54219 525 aa9.38□□□□□ -0.91
CLK3-222ENST00000568232 MXRA7P84157 204 aa9.38□□□□□ -0.91
CLK3-222ENST00000568232 ST3GAL3Q11203 375 aa9.38□□□□□ -0.91
CLK3-222ENST00000568232 ANKDD1AQ495B1 522 aa9.38□□□□□ -0.91
CLK3-222ENST00000568232 ZBED5Q49AG3 693 aa9.38□□□□□ -0.91
CLK3-222ENST00000568232 AGKQ53H12 422 aa9.38□□□□□ -0.91
CLK3-222ENST00000568232 LYPD4Q6UWN0 246 aa9.38□□□□□ -0.91
CLK3-222ENST00000568232 ZNF782Q6ZMW2 699 aaPredicted RBP9.38□□□□□ -0.91
CLK3-222ENST00000568232 CCDC80Q76M96 950 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms