RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 SEMG2Q02383 582 aa1□□□□□ -2.25
VPS35-207ENST00000568191 KRTAP21-3Q3LHN1 58 aa1□□□□□ -2.25
VPS35-207ENST00000568191 HIKESHIQ53FT3 197 aa1□□□□□ -2.25
VPS35-207ENST00000568191 KLHL12Q53G59 568 aa1□□□□□ -2.25
VPS35-207ENST00000568191 UBE2UQ5VVX9 321 aa1□□□□□ -2.25
VPS35-207ENST00000568191 PDPK2PQ6A1A2 396 aa1□□□□□ -2.25
VPS35-207ENST00000568191 PRSS54Q6PEW0 395 aa1□□□□□ -2.25
VPS35-207ENST00000568191 WDR59Q6PJI9 974 aa1□□□□□ -2.25
VPS35-207ENST00000568191 DEGS2Q6QHC5 323 aa1□□□□□ -2.25
VPS35-207ENST00000568191 NPSR1Q6W5P4 371 aa1□□□□□ -2.25
VPS35-207ENST00000568191 LUZP2Q86TE4 346 aa1□□□□□ -2.25
VPS35-207ENST00000568191 COMTD1Q86VU5 262 aa1□□□□□ -2.25
VPS35-207ENST00000568191 ERO1BQ86YB8 467 aa1□□□□□ -2.25
VPS35-207ENST00000568191 KATNAL2Q8IYT4 538 aa1□□□□□ -2.25
VPS35-207ENST00000568191 OFCC1Q8IZS5 231 aa1□□□□□ -2.25
VPS35-207ENST00000568191 FAM9CQ8IZT9 166 aa1□□□□□ -2.25
VPS35-207ENST00000568191 TCAIMQ8N3R3 496 aa1□□□□□ -2.25
VPS35-207ENST00000568191 GTPBP8Q8N3Z3 284 aaPredicted RBP1□□□□□ -2.25
VPS35-207ENST00000568191 LINC00469Q8N7U9 141 aa1□□□□□ -2.25
VPS35-207ENST00000568191 OR4M1Q8NGD0 313 aa1□□□□□ -2.25
VPS35-207ENST00000568191 OR1J4Q8NGS1 313 aa1□□□□□ -2.25
VPS35-207ENST00000568191 FAM81AQ8TBF8 368 aa1□□□□□ -2.25
VPS35-207ENST00000568191 ACMSDQ8TDX5 336 aa1□□□□□ -2.25
VPS35-207ENST00000568191 MITD1Q8WV92 249 aa1□□□□□ -2.25
VPS35-207ENST00000568191 TSEN15Q8WW01 171 aaKnown RBP1□□□□□ -2.25
VPS35-207ENST00000568191 KIAA1143Q96AT1 154 aaPredicted RBP1□□□□□ -2.25
VPS35-207ENST00000568191 ZNF707Q96C28 371 aaPredicted RBP1□□□□□ -2.25
VPS35-207ENST00000568191 DCPSQ96C86 337 aaKnown RBP1□□□□□ -2.25
VPS35-207ENST00000568191 C8orf76Q96K31 380 aa1□□□□□ -2.25
VPS35-207ENST00000568191 ZNF396Q96N95 335 aaPredicted RBP1□□□□□ -2.25
VPS35-207ENST00000568191 PANX1Q96RD7 426 aa1□□□□□ -2.25
VPS35-207ENST00000568191 SEC22CQ9BRL7 303 aa1□□□□□ -2.25
VPS35-207ENST00000568191 UQCC2Q9BRT2 126 aa1□□□□□ -2.25
VPS35-207ENST00000568191 CHCHD7Q9BUK0 85 aa1□□□□□ -2.25
VPS35-207ENST00000568191 BLZF1Q9H2G9 400 aa1□□□□□ -2.25
VPS35-207ENST00000568191 TDRD3Q9H7E2 651 aaKnown RBP1□□□□□ -2.25
VPS35-207ENST00000568191 TMEM185BQ9H7F4 350 aa1□□□□□ -2.25
VPS35-207ENST00000568191 AUNIPQ9H7T9 357 aa1□□□□□ -2.25
VPS35-207ENST00000568191 GEMIN7Q9H840 131 aaKnown RBP1□□□□□ -2.25
VPS35-207ENST00000568191 CYP3A43Q9HB55 503 aa1□□□□□ -2.25
VPS35-207ENST00000568191 UBAP1Q9NZ09 502 aa1□□□□□ -2.25
VPS35-207ENST00000568191 PTTG3PQ9NZH4 202 aa1□□□□□ -2.25
VPS35-207ENST00000568191 PDP1Q9P0J1 537 aaPredicted RBP1□□□□□ -2.25
VPS35-207ENST00000568191 C15orf41Q9Y2V0 281 aa1□□□□□ -2.25
VPS35-207ENST00000568191 RPRD2Q5VT52 1461 aaKnown RBP0.99□□□□□ -2.25
VPS35-207ENST00000568191 KIAA1671Q9BY89 1806 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 TRAV25A0A0B4J276 109 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 ERICH2A1L162 156 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 IQCF5A8MTL0 148 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 C9JVG2 144 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 K7ERQ8 282 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 ZNF701M0R085 212 aaPredicted RBP0.99□□□□□ -2.25
VPS35-207ENST00000568191 PSMD11O00231 422 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 TRDMT1O14717 391 aaKnown RBP0.99□□□□□ -2.25
VPS35-207ENST00000568191 SCAMP2O15127 329 aaKnown RBP0.99□□□□□ -2.25
VPS35-207ENST00000568191 EIF4E2O60573 245 aaKnown RBP0.99□□□□□ -2.25
VPS35-207ENST00000568191 PLIN3O60664 434 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 TGM6O95932 706 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 IGLV7-43P04211 117 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 CLTAP09496 248 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 ZNF35P13682 527 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 ZNF3P17036 446 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 PTNP21246 168 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 TUBG1P23258 451 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 RPS5P46782 204 aaKnown RBP0.99□□□□□ -2.25
VPS35-207ENST00000568191 RAB7AP51149 207 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 RGS8P57771 180 aaPredicted RBP0.99□□□□□ -2.25
VPS35-207ENST00000568191 RPS15P62841 145 aaKnown RBP0.99□□□□□ -2.25
VPS35-207ENST00000568191 CTAG1AP78358 180 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 MERTKQ12866 999 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 XRCC4Q13426 336 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 HNRNPA1L2Q32P51 320 aaKnown RBP0.99□□□□□ -2.25
VPS35-207ENST00000568191 SLC25A35Q3KQZ1 300 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 LUZP6Q538Z0 58 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 XKR7Q5GH72 579 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 GCSAMLQ5JQS6 135 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 PLCXD3Q63HM9 321 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 REEP3Q6NUK4 255 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 MED27Q6P2C8 311 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 ERICH5Q6P6B1 374 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 TMEM220Q6QAJ8 160 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 SPNS3Q6ZMD2 512 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 MBOAT2Q6ZWT7 520 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 EIF3MQ7L2H7 374 aaKnown RBP0.99□□□□□ -2.25
VPS35-207ENST00000568191 CD302Q8IX05 232 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 MICU2Q8IYU8 434 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 IQCKQ8N0W5 287 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 TRIML2Q8N7C3 387 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 ASCC1Q8N9N2 400 aaKnown RBP0.99□□□□□ -2.25
VPS35-207ENST00000568191 SNX31Q8N9S9 440 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 OR4C5Q8NGB2 326 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 GLYATL2Q8WU03 294 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 MSANTD3Q96H12 275 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 ZBED3Q96IU2 234 aaPredicted RBP0.99□□□□□ -2.25
VPS35-207ENST00000568191 ARL5BQ96KC2 179 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 KCNS1Q96KK3 526 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 PRRC1Q96M27 445 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 CATSPER2Q96P56 530 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 GPR82Q96P67 336 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 PKMYT1Q99640 499 aa0.99□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms