RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 ZNF100Q8IYN0 542 aa5.49□□□□□ -1.53
CLN3-223ENST00000566472 KCNRGQ8N5I3 272 aa5.49□□□□□ -1.53
CLN3-223ENST00000566472 OR4S1Q8NGB4 309 aa5.49□□□□□ -1.53
CLN3-223ENST00000566472 OR2I1PQ8NGU4 316 aa5.49□□□□□ -1.53
CLN3-223ENST00000566472 OR5H2Q8NGV7 314 aa5.49□□□□□ -1.53
CLN3-223ENST00000566472 CT55Q8WUE5 264 aa5.49□□□□□ -1.53
CLN3-223ENST00000566472 HAS2Q92819 552 aa5.49□□□□□ -1.53
CLN3-223ENST00000566472 MRGPRFQ96AM1 343 aa5.49□□□□□ -1.53
CLN3-223ENST00000566472 CMBLQ96DG6 245 aa5.49□□□□□ -1.53
CLN3-223ENST00000566472 PHYHIPLQ96FC7 376 aa5.49□□□□□ -1.53
CLN3-223ENST00000566472 POM121Q96HA1 1249 aa5.49□□□□□ -1.53
CLN3-223ENST00000566472 LOXL4Q96JB6 756 aa5.49□□□□□ -1.53
CLN3-223ENST00000566472 ADGRG7Q96K78 797 aa5.49□□□□□ -1.53
CLN3-223ENST00000566472 LYZL4Q96KX0 146 aa5.49□□□□□ -1.53
CLN3-223ENST00000566472 GNRHR2Q96P88 292 aa5.49□□□□□ -1.53
CLN3-223ENST00000566472 TECTBQ96PL2 329 aa5.49□□□□□ -1.53
CLN3-223ENST00000566472 TAAR9Q96RI9 348 aa5.49□□□□□ -1.53
CLN3-223ENST00000566472 GAL3ST1Q99999 423 aa5.49□□□□□ -1.53
CLN3-223ENST00000566472 SRXN1Q9BYN0 137 aa5.49□□□□□ -1.53
CLN3-223ENST00000566472 ARL6Q9H0F7 186 aa5.49□□□□□ -1.53
CLN3-223ENST00000566472 SLC25A32Q9H2D1 315 aa5.49□□□□□ -1.53
CLN3-223ENST00000566472 ZMAT3Q9HA38 289 aaKnown RBP5.49□□□□□ -1.53
CLN3-223ENST00000566472 TMEM38BQ9NVV0 291 aa5.49□□□□□ -1.53
CLN3-223ENST00000566472 PLEK2Q9NYT0 353 aa5.49□□□□□ -1.53
CLN3-223ENST00000566472 MYEF2Q9P2K5 600 aaKnown RBP5.49□□□□□ -1.53
CLN3-223ENST00000566472 PFDN2Q9UHV9 154 aa5.49□□□□□ -1.53
CLN3-223ENST00000566472 TCFL5Q9UL49 500 aa5.49□□□□□ -1.53
CLN3-223ENST00000566472 TNFSF18Q9UNG2 199 aa5.49□□□□□ -1.53
CLN3-223ENST00000566472 FARSAQ9Y285 508 aaKnown RBP5.49□□□□□ -1.53
CLN3-223ENST00000566472 KCNK7Q9Y2U2 307 aa5.49□□□□□ -1.53
CLN3-223ENST00000566472 MPDZO75970 2070 aa5.49□□□□□ -1.53
CLN3-223ENST00000566472 TRBV6-7A0A0A0MS04 114 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 KANTRA0A1W2PQU2 76 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 OR5H15A6NDH6 313 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 OR6C6A6NF89 314 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 OR5H14A6NHG9 310 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 DBX1A6NMT0 343 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 OR2AT4A6NND4 320 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 C21orf140B9A014 251 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 I3L521 148 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 TNFSF11O14788 317 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 SOCS1O15524 211 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 RRP8O43159 456 aaKnown RBP5.48□□□□□ -1.53
CLN3-223ENST00000566472 EFSO43281 561 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 BCL2L11O43521 198 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 SGCEO43556 437 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 GDF9O60383 454 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 CYTIPO60759 359 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 CRTAPO75718 401 aaPredicted RBP5.48□□□□□ -1.53
CLN3-223ENST00000566472 SFT2D2O95562 160 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 PDGFBP01127 241 aaPredicted RBP5.48□□□□□ -1.53
CLN3-223ENST00000566472 CSN2P05814 226 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 NMBP08949 121 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 AMY2BP19961 511 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 CNR1P21554 472 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 ZP3P21754 424 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 OTX2P32243 289 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 SLC6A9P48067 706 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 TMEM50BP56557 158 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 CARD18P57730 90 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 IL13RA1P78552 427 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 CAMK2BQ13554 666 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 ARFRP1Q13795 201 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 KISS1Q15726 138 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 NKPD1Q17RQ9 610 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 MICBQ29980 383 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 PLEKHN1Q494U1 663 aaPredicted RBP5.48□□□□□ -1.53
CLN3-223ENST00000566472 TMEM128Q5BJH2 165 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 ACER2Q5QJU3 275 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 C1QTNF12Q5T7M4 302 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 RGS7BPQ6MZT1 257 aaPredicted RBP5.48□□□□□ -1.53
CLN3-223ENST00000566472 ASCL4Q6XD76 172 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 ACOT7LQ6ZUV0 252 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 LHFPL2Q6ZUX7 228 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 Q7L0L9 218 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 AAED1Q7RTV5 226 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 HSD17B13Q7Z5P4 300 aaPredicted RBP5.48□□□□□ -1.53
CLN3-223ENST00000566472 GGNQ86UU5 652 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 CD163Q86VB7 1156 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 LHFPL1Q86WI0 220 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 SULF2Q8IWU5 870 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 EIF4E3Q8N5X7 224 aaKnown RBP5.48□□□□□ -1.53
CLN3-223ENST00000566472 ESX1Q8N693 406 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 GVQW1Q8N7I0 195 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 TMEM104Q8NE00 496 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 SEMA6DQ8NFY4 1073 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 OR51T1Q8NGJ9 327 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 OR5M9Q8NGP3 310 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 OR1F12Q8NHA8 337 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 OR14L1PQ8NHC6 308 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 TERB2Q8NHR7 220 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 COQ8AQ8NI60 647 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 LRRC20Q8TCA0 184 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 RHBDD1Q8TEB9 315 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 ST8SIA4Q92187 359 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 RBPMSQ93062 196 aaKnown RBP5.48□□□□□ -1.53
CLN3-223ENST00000566472 CPNE4Q96A23 557 aaPredicted RBP5.48□□□□□ -1.53
CLN3-223ENST00000566472 WDR89Q96FK6 387 aaPredicted RBP5.48□□□□□ -1.53
CLN3-223ENST00000566472 WBP1Q96G27 269 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 LIN37Q96GY3 246 aaPredicted RBP5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms